Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0733.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)       84   1e-16
At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)       84   1e-16
At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)       84   1e-16
At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)...    81   9e-16
At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)...    81   9e-16
At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)       80   1e-15
At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)...    70   2e-12
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)...    66   2e-11
At3g63200.1 68416.m07100 patatin-related low similarity to patat...    31   0.97 
At1g67140.1 68414.m07638 expressed protein                             29   3.9  
At3g54430.1 68416.m06021 lateral root primordium (LRP) protein-r...    27   9.0  

>At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 38/67 (56%), Positives = 53/67 (79%)
 Frame = +1

Query: 4   VAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLS 183
           VAAYLLAVL GK +P +AD++ IL SVG E +  +++ ++ E+ GKD+ +LIAAGREKL+
Sbjct: 4   VAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLA 63

Query: 184 SMPVGGG 204
           S+P GGG
Sbjct: 64  SVPSGGG 70


>At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 38/67 (56%), Positives = 53/67 (79%)
 Frame = +1

Query: 4   VAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLS 183
           VAAYLLAVL GK +P +AD++ IL SVG E +  +++ ++ E+ GKD+ +LIAAGREKL+
Sbjct: 4   VAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLA 63

Query: 184 SMPVGGG 204
           S+P GGG
Sbjct: 64  SVPSGGG 70


>At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 38/67 (56%), Positives = 53/67 (79%)
 Frame = +1

Query: 4   VAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLS 183
           VAAYLLAVL GK +P +AD++ IL SVG E +  +++ ++ E+ GKD+ +LIAAGREKL+
Sbjct: 4   VAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLA 63

Query: 184 SMPVGGG 204
           S+P GGG
Sbjct: 64  SVPSGGG 70


>At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)
           acidic ribosomal protein P2, maize,  PIR:S54179
          Length = 111

 Score = 80.6 bits (190), Expect = 9e-16
 Identities = 34/66 (51%), Positives = 53/66 (80%)
 Frame = +1

Query: 7   AAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSS 186
           AA+LLAVLGG   P+A +++ I+ +VG + DGE ++ ++ E++GKD+ +LIA+GREKL+S
Sbjct: 5   AAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKLAS 64

Query: 187 MPVGGG 204
           +P GGG
Sbjct: 65  VPSGGG 70


>At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)
           acidic ribosomal protein P2, maize,  PIR:S54179
          Length = 111

 Score = 80.6 bits (190), Expect = 9e-16
 Identities = 34/66 (51%), Positives = 53/66 (80%)
 Frame = +1

Query: 7   AAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSS 186
           AA+LLAVLGG   P+A +++ I+ +VG + DGE ++ ++ E++GKD+ +LIA+GREKL+S
Sbjct: 5   AAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKLAS 64

Query: 187 MPVGGG 204
           +P GGG
Sbjct: 65  VPSGGG 70


>At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)
          Length = 115

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 36/67 (53%), Positives = 51/67 (76%)
 Frame = +1

Query: 4   VAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLS 183
           VAA+LLAVL GK +P   D++ IL SVG E +  +++ ++ E+ GKD+ +LIAAGREKL+
Sbjct: 4   VAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLA 63

Query: 184 SMPVGGG 204
           S+P GGG
Sbjct: 64  SVPSGGG 70


>At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)
           acidic ribosomal protein P2, Parthenium
           argentatum,SWISSPROT:RLA2_PARAR
          Length = 114

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 33/67 (49%), Positives = 46/67 (68%)
 Frame = +1

Query: 4   VAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLS 183
           VAAYLLA L G   P+ AD++KI+ SVG E D EK+    + +  +DV +LIA GREK++
Sbjct: 4   VAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGREKMA 63

Query: 184 SMPVGGG 204
           ++  GGG
Sbjct: 64  ALSSGGG 70


>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
           similar to acidic ribosomal protein P2b (rpp2b)
           GB:U62753 GI:2431770 from [Zea mays]
          Length = 115

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 32/66 (48%), Positives = 45/66 (68%)
 Frame = +1

Query: 4   VAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLS 183
           +AA+LLA LGG   P + D++KIL SVG E D  K+  + + +   DV +LIAAGREK+S
Sbjct: 4   IAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGREKMS 63

Query: 184 SMPVGG 201
           ++  GG
Sbjct: 64  ALSSGG 69


>At3g63200.1 68416.m07100 patatin-related low similarity to
           patatin-like latex protein allergen Hev b 7 - Hevea
           brasiliensis, EMBL:AF113546; contains patatin domain
           PF01734
          Length = 384

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
 Frame = +1

Query: 64  EKILSSVGIEADGEKLKKVITELNGKDVE----QLIAAGREKLSSMP 192
           E++L   G+E     +K+++TE NG+ +E    +L+A+G+  L   P
Sbjct: 325 EELLKERGVETAPFGVKRILTESNGERIEGFVQRLVASGKSSLPPSP 371


>At1g67140.1 68414.m07638 expressed protein
          Length = 2158

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -3

Query: 180  QLLTSGRNKLFNILAVELSDYFLKLLTVSFDTDGAEDLLNVS 55
            Q L++GR      L+++L    L++L+ SF  D + D+L VS
Sbjct: 1403 QSLSAGRFFSSGFLSIDLCQELLQVLSYSFHMDSSWDILAVS 1444


>At3g54430.1 68416.m06021 lateral root primordium (LRP)
           protein-related similar to lateral root primordium 1
           (LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
           profile PF05142: Domain of unknown function (DUF702)
          Length = 183

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 519 KRRAVNCNTTHYRANWVPGPPXRSTVSIS 433
           K R  NC  TH ++ W+P    RS+ S S
Sbjct: 62  KSRGYNC-VTHVKSTWIPSSATRSSSSPS 89


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,422,988
Number of Sequences: 28952
Number of extensions: 208367
Number of successful extensions: 605
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)