Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0732.Seq
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ... 96 5e-21
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 30 0.37
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 29 0.85
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 28 1.1
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.5
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|... 26 4.5
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam... 26 4.5
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 26 4.5
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 26 6.0
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 26 6.0
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 25 7.9
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa... 25 7.9
>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 95.9 bits (228), Expect = 5e-21
Identities = 43/69 (62%), Positives = 52/69 (75%)
Frame = -2
Query: 238 KSWRVQAVPIDPMSFVLRKALHSAWRGIRDDNLSSVSGIEGCIFCHSNGFIGGNTTLEGA 59
K+WRVQAV IDP SF R L WRGIRD+ LS ++GI GCIF H++GFIGGN T EGA
Sbjct: 252 KAWRVQAVSIDPTSFTCRLPLPEPWRGIRDEKLSELTGIPGCIFVHASGFIGGNQTFEGA 311
Query: 58 LKMAIASLE 32
L+MA +L+
Sbjct: 312 LEMARKALD 320
Score = 93.9 bits (223), Expect = 2e-20
Identities = 53/140 (37%), Positives = 76/140 (54%), Gaps = 4/140 (2%)
Frame = -3
Query: 666 EDLKLIYKKVYESFIQGIDAIDNGIPMTEE--QPKYDIHTHLSNRVKRLEP--RMELTQE 499
+DL+ +Y+KVY+SF++G+DA DNGI +P + L V P E +
Sbjct: 110 QDLETLYEKVYQSFVEGLDANDNGISAYPAGLKPSFKAAMSLPEMVSSFLPAWNSEKQDD 169
Query: 498 TNVDEFFNKAMALVSEDFLYFTRYYINTWFPARNLVRKAIDNRFQIHKSGEIVVFNERFP 319
E F KA L+ F+ +Y +W PA+ L R+AI K I++ ++ FP
Sbjct: 170 QTYLECFQKASDLMGTWFVRSVEHYALSWLPAKTLAREAILKA----KDSPILIVDQFFP 225
Query: 318 WKYHLFDLEQELGIEPQIKY 259
WK HLFD+E+ELGIE Q KY
Sbjct: 226 WKGHLFDIEKELGIENQFKY 245
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 29.9 bits (64), Expect = 0.37
Identities = 24/133 (18%), Positives = 63/133 (47%)
Frame = -3
Query: 480 FNKAMALVSEDFLYFTRYYINTWFPARNLVRKAIDNRFQIHKSGEIVVFNERFPWKYHLF 301
F K+ + ED+ + R+Y N W A +++ + F + +V E ++Y +
Sbjct: 298 FRKSKRVAIEDYKEYIRFYNNLWLVANDMIFGITMSSFILENLHLVVKLIENITFEYAIK 357
Query: 300 DLEQELGIEPQIKYVHSMINQNLGEFKLFQLIL*VLFLGKHYIVHGVESVTIISVQSLGL 121
++ + + I +N ++ +F + +L + V+ + ++++H + + VQ + +
Sbjct: 358 NV-RSMVIWLVDTPAGLKLNNDICKF-IMKLSVWVIDVWSNFLLHCLPWTPFL-VQVVAI 414
Query: 120 KDVFSATAMVSLV 82
A+ M++L+
Sbjct: 415 SGFGGASLMIALI 427
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 28.7 bits (61), Expect = 0.85
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 78 LPPMKPLLWQKIHPSIPETELRLSSRIPRHA 170
+ P+ PLL Q+I S+P++ L S + P HA
Sbjct: 794 ISPITPLLAQEIWQSLPDSYLNSSYQTPFHA 824
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/64 (18%), Positives = 29/64 (45%)
Frame = -3
Query: 669 NEDLKLIYKKVYESFIQGIDAIDNGIPMTEEQPKYDIHTHLSNRVKRLEPRMELTQETNV 490
N+ L+ + K Y ++ ++ D + K + + N++ L + ++ N+
Sbjct: 510 NDPLEEKWSKFYVDLLEKLEKFDEALEFASAISKGKVSIYNKNKILELSKKTAKSKVWNL 569
Query: 489 DEFF 478
D+FF
Sbjct: 570 DDFF 573
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +3
Query: 15 LFHSLASRLAMAIFKAPSNVVLPPMKP----LLWQKIHPSIPETELRL 146
L++S A +A++ + PSNV +PP P W I I +L L
Sbjct: 338 LYNSRARSVALSEYHQPSNVFVPPEDPDLPAFFWDPIINPITSRQLTL 385
>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 492 HWFPELIPFWVQVFSLCYLSEYECHISVVPLSLEFRY 602
HW L+ WV + S Y C + SL+FR+
Sbjct: 231 HWLIWLVLGWVLCNMVAISSSYACTVKNKEQSLDFRW 267
>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 698 SKEESTSFDQMKT*S*FTRKFMNLSFKGLMLLITEF 591
SK+ Q++ KFMN+ FKGL +I+ F
Sbjct: 340 SKDHLKVLQQLRPLIDIVEKFMNVYFKGLSNIISSF 375
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 26.2 bits (55), Expect = 4.5
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +3
Query: 495 WFPELIPFWVQVFSLC 542
W P LI FW+ ++C
Sbjct: 1504 WIPHLIYFWISTLAMC 1519
>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 899
Score = 25.8 bits (54), Expect = 6.0
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = -3
Query: 303 FDLEQELGIEPQIKYVHSMINQNLGEFKLFQLIL*VLFLGKHYIVHGVESVTIISVQSLG 124
FD+ L + K V + + ++F + + +G+ +V+ I +++G
Sbjct: 801 FDMFNALACRSETKSVFKL---GIFSNRMFNIAVGGSLIGQALVVYASPFQRIFQTEAIG 857
Query: 123 LKDVFSATAMVSLVVIPHW-REL*KW 49
LKDV A S V+ W E+ KW
Sbjct: 858 LKDVLILLACTSSVL---WVDEIRKW 880
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = +1
Query: 577 FLCHWN--SVINSINPLNERFINF 642
F CH N SVIN + ++ F+NF
Sbjct: 216 FTCHQNAFSVINEVRNFSQGFVNF 239
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 253 MHIFDLRLNPQFLFQIKQMIFPRKPFIE-YHNLS*LVYLKTII 378
MH + L Q L+Q K + P+K ++ +H ++ +VY ++ I
Sbjct: 206 MHKQESFLRKQLLYQCKSCVKPKKILVDLFHRIN-IVYFRSSI 247
>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 440
Score = 25.4 bits (53), Expect = 7.9
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Frame = -3
Query: 672 PNEDLKLIYKKVYESF---IQGIDAIDNGIPMTEEQPKYDIHTHLSNRVKRLEPRMELTQ 502
P + KL YKK+YE + I+ + P +EE + +++S++ K +E +
Sbjct: 268 PKPENKLDYKKLYEKYSALIEKYPIVFIEDPFSEED--WGAFSYMSSKTK-VEVIADDLT 324
Query: 501 ETNVDEFFNKAMALVSEDFLYFTRYYINT---WFPARNLVRKAIDNRFQIHKSGE 346
TNV +KA+ L + L I + A N+ +KA H+SGE
Sbjct: 325 VTNVKR-LSKAIELKCANALLVKINQIGSLSETIDAANMAKKAGWGLMVSHRSGE 378
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,103,046
Number of Sequences: 5004
Number of extensions: 69516
Number of successful extensions: 195
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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