Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0732.Seq
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0345 - 28142434-28142658,28143087-28143158,28143252-281433...   118   6e-27
03_06_0542 - 34611864-34612364,34613932-34614132,34614745-34615059     29   4.7  
05_04_0148 - 18426903-18427106,18430516-18430594,18430752-184309...    28   8.2  

>02_05_0345 -
           28142434-28142658,28143087-28143158,28143252-28143371,
           28143483-28143674,28144919-28145017,28145448-28145594,
           28146310-28146513
          Length = 352

 Score =  118 bits (283), Expect = 6e-27
 Identities = 57/142 (40%), Positives = 91/142 (64%), Gaps = 4/142 (2%)
 Frame = -3

Query: 669 NEDLKLIYKKVYESFIQGIDAIDNGIPM--TEEQPKYDIHTHLSNRVKRLEPRMELTQET 496
           +ED+  +Y  +Y+SF++ +DA+DNGI    T++ PKY  +THLS+RV RL P      ++
Sbjct: 134 HEDVHRLYLAIYKSFVEALDAVDNGINQYDTDQPPKYVNNTHLSSRVGRLNPDWTDPDQS 193

Query: 495 NVDE--FFNKAMALVSEDFLYFTRYYINTWFPARNLVRKAIDNRFQIHKSGEIVVFNERF 322
              E   F +AM L   +F+   R+++ +W PAR++V + + +R ++  S EI+V +   
Sbjct: 194 PEKENAAFQQAMMLAGSEFMESVRFHVKSWLPARSIVLECLLSRGKVDPSEEIMVLDRFC 253

Query: 321 PWKYHLFDLEQELGIEPQIKYV 256
           PWK HLF+LE+EL I+P  KYV
Sbjct: 254 PWKLHLFELEEELKIDPLTKYV 275



 Score = 91.1 bits (216), Expect = 8e-19
 Identities = 41/73 (56%), Positives = 53/73 (72%)
 Frame = -2

Query: 250 NDKPKSWRVQAVPIDPMSFVLRKALHSAWRGIRDDNLSSVSGIEGCIFCHSNGFIGGNTT 71
           +++ KSWRVQAV + P  F  RK L   WRG+RDD LS+  GI GC+F H +GFIGGN T
Sbjct: 279 DERSKSWRVQAVGVAPDRFESRKPLPEKWRGLRDDELSNDIGIPGCVFVHMSGFIGGNKT 338

Query: 70  LEGALKMAIASLE 32
            EGAL+MA A+++
Sbjct: 339 YEGALEMARAAIK 351


>03_06_0542 - 34611864-34612364,34613932-34614132,34614745-34615059
          Length = 338

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = -3

Query: 405 ARNLVRKAIDNRFQIHKSGE 346
           AR+++R+ + NRF +HK+G+
Sbjct: 186 ARHIIRRTLCNRFTVHKAGK 205


>05_04_0148 -
           18426903-18427106,18430516-18430594,18430752-18430935,
           18431020-18431063,18432028-18432165,18432713-18434511
          Length = 815

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
 Frame = +3

Query: 24  SLASRLAMAIFKAPSNVVLPPMKPL-LWQKIHPSIPETEL---RLSSRIPRHALCNAFLR 191
           SL+S L  A+    ++   PP      +   HPS P   L    LS R PR     A L 
Sbjct: 5   SLSSELDPALLSTSTSSSSPPDSASPSFSFYHPSPPNYTLAVSNLSCRDPRRGSGGAGLL 64

Query: 192 TKLIGSIGTA*TLQDFGLSLNAHI*FAAQS 281
           + L+GS  T+      G  L  ++ F A S
Sbjct: 65  SWLLGSFSTSSPPATGGAGLLNNVSFTASS 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,692,211
Number of Sequences: 37544
Number of extensions: 391156
Number of successful extensions: 968
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)