Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0732.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.)             131   6e-31
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_9853| Best HMM Match : Lipase_3 (HMM E-Value=0.00075)               30   1.6  
SB_17484| Best HMM Match : Pox_A32 (HMM E-Value=0.025)                 29   2.7  
SB_38590| Best HMM Match : 7tm_1 (HMM E-Value=0.0022)                  29   3.6  
SB_18358| Best HMM Match : Arf (HMM E-Value=0)                         28   6.3  

>SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 951

 Score =  131 bits (316), Expect = 6e-31
 Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 3/154 (1%)
 Frame = -3

Query: 669 NEDLKLIYKKVYESFIQGIDAIDNGIPMTEEQPKYDIHTHLSNRVKRLEPRMELTQETNV 490
           ++ L  +Y K+YE+ IQ +DAIDNG+  ++E+P+Y I T+LS RV  L P+     + N+
Sbjct: 121 HQALDKVYDKIYENLIQEVDAIDNGVSQSDEKPRYIITTNLSARVGNLNPKW---NDKNM 177

Query: 489 DE--FFNKAMALVSEDFLYFTRYYINTWFPARNLVRKAIDNRFQIHKSGEIVVFNE-RFP 319
           DE   FNKA+ LV  +F+    YY N+W PAR+LV+ A+ +RF++ +SGEI    E   P
Sbjct: 178 DEEAQFNKALQLVGGEFMDKVLYYKNSWLPARSLVKGAVLHRFEVDESGEIAELAECGCP 237

Query: 318 WKYHLFDLEQELGIEPQIKYVHSMINQNLGEFKL 217
           WK HLFDLE+EL IE  IK+V  + + N G++++
Sbjct: 238 WKDHLFDLEKELNIEVPIKFV--IYSDNSGKWRV 269


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 657  KLIYKKVYESFIQGIDAIDNGIPMTEEQPKYDIHTHLS 544
            KL+Y       + G+D +DN +P  +E     IH H++
Sbjct: 4118 KLVYVNKLNKKLSGMDLLDNALPDMDEDGASGIHEHVT 4155


>SB_9853| Best HMM Match : Lipase_3 (HMM E-Value=0.00075)
          Length = 593

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/83 (20%), Positives = 41/83 (49%)
 Frame = -3

Query: 546 SNRVKRLEPRMELTQETNVDEFFNKAMALVSEDFLYFTRYYINTWFPARNLVRKAIDNRF 367
           +NR   + PR  + ++T     ++K+   +++  L     Y +  + + + +++A+ N+F
Sbjct: 317 ANRENMVTPRYPICEQT-----WSKSKLNIADMALLANLTYNSAMYSSNDTLKQAVLNQF 371

Query: 366 QIHKSGEIVVFNERFPWKYHLFD 298
               +   V F +  P+ YH+ D
Sbjct: 372 LSQNNWSAVSFADHAPYYYHVTD 394


>SB_17484| Best HMM Match : Pox_A32 (HMM E-Value=0.025)
          Length = 1616

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -2

Query: 190  LRKALHSAWRGIRDDNLSSVSGIEGCIFCHSNGFIGGN 77
            +R  +HSAW  +R D ++S++ + G    ++  F+GGN
Sbjct: 1465 MRIRIHSAWSVLRID-MASIAILVGGAVLNATAFVGGN 1501


>SB_38590| Best HMM Match : 7tm_1 (HMM E-Value=0.0022)
          Length = 284

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 188 KNKTHRINWNSLNSPRFWFIIECTYLIC 271
           ++ THR++   +N  R  FI  C +LIC
Sbjct: 166 RSSTHRVSVEDINVTRTLFITVCGFLIC 193


>SB_18358| Best HMM Match : Arf (HMM E-Value=0)
          Length = 214

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +2

Query: 143 IIVTDSTPCTM*CFPKNKTHRINWNSLNSPRFWFIIECTYLI 268
           +I  +   C     P+  TH ++ + LN+   WF+  C+ L+
Sbjct: 127 LIFANKQDCPNAIPPREITHMLSLHDLNARHLWFVQPCSALL 168


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,553,308
Number of Sequences: 59808
Number of extensions: 454009
Number of successful extensions: 1134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)