Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0732.Seq
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83113-8|CAB05549.1| 340|Caenorhabditis elegans Hypothetical pr... 107 1e-23
Z81042-6|CAB02797.1| 340|Caenorhabditis elegans Hypothetical pr... 107 1e-23
Z72514-8|CAA96677.3| 416|Caenorhabditis elegans Hypothetical pr... 28 5.6
U39471-1|AAA80132.4| 461|Caenorhabditis elegans Intestinal acid... 28 5.6
Z81584-1|CAB04679.1| 217|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z78416-6|CAD44098.2| 624|Caenorhabditis elegans Hypothetical pr... 27 9.8
>Z83113-8|CAB05549.1| 340|Caenorhabditis elegans Hypothetical
protein C27H6.8 protein.
Length = 340
Score = 107 bits (256), Expect = 1e-23
Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 2/137 (1%)
Frame = -3
Query: 660 LKLIYKKVYESFIQGIDAIDNGIPMTEEQPKYDIHTHLSNRVKRLEPRMELTQETNVDEF 481
+ L Y ++YE F++ IDAIDNGI + P+Y +LS+R + E + DE
Sbjct: 114 IDLFYHRLYEQFVESIDAIDNGISQYDGVPRYHSSGNLSSRTGQFNSHWN-EPENDADER 172
Query: 480 FNKAMALVSEDFLYFTRYYINTWFPARNLVRKAIDNRFQIHKSGEIVVF-NERFPWKYHL 304
F +AM + E+F +Y N W+PAR ++ A+D RF+I SG I++ N PWK H
Sbjct: 173 FQQAMQFIGEEFSRSVKYLANVWWPAREIIEAAVDKRFEIDASGRIILIENGGCPWKEHF 232
Query: 303 FDLEQELGI-EPQIKYV 256
FD+E E I + I Y+
Sbjct: 233 FDIEVEKNIADDNITYI 249
Score = 89.8 bits (213), Expect = 2e-18
Identities = 46/81 (56%), Positives = 56/81 (69%), Gaps = 2/81 (2%)
Frame = -2
Query: 253 FNDKPK-SWRVQAVPIDPMS-FVLRKALHSAWRGIRDDNLSSVSGIEGCIFCHSNGFIGG 80
F+D SWRVQA+P+D MS F R L +AWRG+RDD+LS SGI G +F H +GFIGG
Sbjct: 251 FSDSTNASWRVQAIPVDKMSSFENRMPLPAAWRGLRDDDLSKESGIPGGVFVHISGFIGG 310
Query: 79 NTTLEGALKMAIASLEANE*N 17
N T EGA+ MA +LE E N
Sbjct: 311 NLTREGAIAMARKALEIGEEN 331
>Z81042-6|CAB02797.1| 340|Caenorhabditis elegans Hypothetical
protein C27H6.8 protein.
Length = 340
Score = 107 bits (256), Expect = 1e-23
Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 2/137 (1%)
Frame = -3
Query: 660 LKLIYKKVYESFIQGIDAIDNGIPMTEEQPKYDIHTHLSNRVKRLEPRMELTQETNVDEF 481
+ L Y ++YE F++ IDAIDNGI + P+Y +LS+R + E + DE
Sbjct: 114 IDLFYHRLYEQFVESIDAIDNGISQYDGVPRYHSSGNLSSRTGQFNSHWN-EPENDADER 172
Query: 480 FNKAMALVSEDFLYFTRYYINTWFPARNLVRKAIDNRFQIHKSGEIVVF-NERFPWKYHL 304
F +AM + E+F +Y N W+PAR ++ A+D RF+I SG I++ N PWK H
Sbjct: 173 FQQAMQFIGEEFSRSVKYLANVWWPAREIIEAAVDKRFEIDASGRIILIENGGCPWKEHF 232
Query: 303 FDLEQELGI-EPQIKYV 256
FD+E E I + I Y+
Sbjct: 233 FDIEVEKNIADDNITYI 249
Score = 89.8 bits (213), Expect = 2e-18
Identities = 46/81 (56%), Positives = 56/81 (69%), Gaps = 2/81 (2%)
Frame = -2
Query: 253 FNDKPK-SWRVQAVPIDPMS-FVLRKALHSAWRGIRDDNLSSVSGIEGCIFCHSNGFIGG 80
F+D SWRVQA+P+D MS F R L +AWRG+RDD+LS SGI G +F H +GFIGG
Sbjct: 251 FSDSTNASWRVQAIPVDKMSSFENRMPLPAAWRGLRDDDLSKESGIPGGVFVHISGFIGG 310
Query: 79 NTTLEGALKMAIASLEANE*N 17
N T EGA+ MA +LE E N
Sbjct: 311 NLTREGAIAMARKALEIGEEN 331
>Z72514-8|CAA96677.3| 416|Caenorhabditis elegans Hypothetical
protein T10B10.5 protein.
Length = 416
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 144 LSSRIPRHALCNAFLRTKLIGSIGT 218
L+ IP+H LC F+ +LI GT
Sbjct: 351 LTFSIPKHTLCEVFITVELITETGT 375
>U39471-1|AAA80132.4| 461|Caenorhabditis elegans Intestinal acid
phosphatase protein4 protein.
Length = 461
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/79 (25%), Positives = 35/79 (44%)
Frame = -3
Query: 657 KLIYKKVYESFIQGIDAIDNGIPMTEEQPKYDIHTHLSNRVKRLEPRMELTQETNVDEFF 478
KLIY + + + I +GIP E Y L N +P ME+ Q +V+
Sbjct: 380 KLIYHRHENDTLSNV--ITSGIPGCEGSGDYCPMAVLKNYSDVFKPEMEMNQWCDVNILK 437
Query: 477 NKAMALVSEDFLYFTRYYI 421
+ + + + L F+ +Y+
Sbjct: 438 STSTSSIFSSLLAFSIFYL 456
>Z81584-1|CAB04679.1| 217|Caenorhabditis elegans Hypothetical
protein T04C12.1 protein.
Length = 217
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 5/27 (18%)
Frame = +1
Query: 562 VIFRLF-----LCHWNSVINSINPLNE 627
VIF LF CH NS+ N+INP++E
Sbjct: 94 VIFLLFAACNSFCHPNSLTNTINPMSE 120
>Z78416-6|CAD44098.2| 624|Caenorhabditis elegans Hypothetical
protein C23H4.7 protein.
Length = 624
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/35 (25%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -3
Query: 348 EIVVFNER-FPWKYHLFDLEQELGIEPQIKYVHSM 247
++ +F R +P+ +H+ D++ +GI ++ + H M
Sbjct: 413 DVYLFETRQWPYSFHVSDMQYFIGIHREVLHTHDM 447
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,553,827
Number of Sequences: 27780
Number of extensions: 363174
Number of successful extensions: 887
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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