Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0732.Seq
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.9  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   6.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   8.5  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 615 IDAIDNGIPMTEEQPKYDIHT 553
           +DAID+G  + E   K DI+T
Sbjct: 337 MDAIDSGYLIDEYGKKIDIYT 357


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 615 IDAIDNGIPMTEEQPKYDIHT 553
           +DAID+G  + E   K DI+T
Sbjct: 337 MDAIDSGYLIDEYGKKIDIYT 357


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/61 (21%), Positives = 28/61 (45%)
 Frame = -3

Query: 600 NGIPMTEEQPKYDIHTHLSNRVKRLEPRMELTQETNVDEFFNKAMALVSEDFLYFTRYYI 421
           NG+   ++  K  +     N++   E +  +++E+N ++F    M  V+E        Y+
Sbjct: 427 NGLTEPKKDNKRKLSDSTMNKINNHEYKRSVSRESNSNQFI--LMTTVNEGNNNMAATYM 484

Query: 420 N 418
           N
Sbjct: 485 N 485


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +1

Query: 277 NPQFLFQIKQMIFPRKPFIEYHNLS*LVYLKTIINSFPD 393
           +PQ      + I PR+    YH++  + Y   I+   PD
Sbjct: 144 SPQMYSSGGEEITPRQSHQSYHHMDSVEYKPEIMEYKPD 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,085
Number of Sequences: 438
Number of extensions: 4943
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)