Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0731.Seq
         (648 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    44   0.003
UniRef50_A5K050 Cluster: Putative uncharacterized protein; n=1; ...    34   3.4  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 44.0 bits (99), Expect = 0.003
 Identities = 26/52 (50%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
 Frame = +1

Query: 289 VARRRRLSHLVEFKKCLEINRGNGGF----FLLLR*VNEFTAHLVLSGYWSP 432
           +A R   +   E   C +IN     F    FLLLR V+E TAHLVLSGYWSP
Sbjct: 124 IAFRLPANRYEEKTVCSQINANPKRFCLSRFLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_A5K050 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 1617

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +1

Query: 313 HLVEFKKCLEINRGNGGFFLLLR*VNE-FTAHLVLSGYWSPYNRCVFKVTERDRLATYVT 489
           H +    C  +  G+GG+ L L  +N   ++ LV+  +W  Y + VFK  +   L T   
Sbjct: 736 HFLSALYCSFLGGGSGGYLLELDLLNRVLSSTLVIPSFWK-YQKRVFKKIDTCLLCTLRR 794

Query: 490 RSRSSVTEDRRGVS 531
            +RS  +  RR +S
Sbjct: 795 MNRSDYSPRRRDLS 808


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 619,674,413
Number of Sequences: 1657284
Number of extensions: 12311324
Number of successful extensions: 23223
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23221
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)