Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0731.Seq
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    23   1.6  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   1.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.9  

>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 216 FPLNQESPGVERRAPQLFLYN 278
           FP+    PG+ R AP+L  Y+
Sbjct: 77  FPIKNTEPGMFRVAPELLGYS 97


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = -3

Query: 58  VLRTMHLLYFCVIKII 11
           ++ T+HLL++CV+ I+
Sbjct: 220 IIFTIHLLFYCVLIIL 235


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 247  RGAPLNSSCTTGGRVARRRRLSHLVEFKKCLEI 345
            R A LN++ T  G     RRL+   E  K LE+
Sbjct: 1441 RFAKLNANGTNAGTPVLSRRLTMRRETMKALEV 1473


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 247  RGAPLNSSCTTGGRVARRRRLSHLVEFKKCLEI 345
            R A LN++ T  G     RRL+   E  K LE+
Sbjct: 1441 RFAKLNANGTNAGTPVLSRRLTMRRETMKALEV 1473


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 247  RGAPLNSSCTTGGRVARRRRLSHLVEFKKCLEI 345
            R A LN++ T  G     RRL+   E  K LE+
Sbjct: 1441 RFAKLNANGTNAGTPVLSRRLTMRRETMKALEV 1473


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 247  RGAPLNSSCTTGGRVARRRRLSHLVEFKKCLEI 345
            R A LN++ T  G     RRL+   E  K LE+
Sbjct: 1441 RFAKLNANGTNAGTPVLSRRLTMRRETMKALEV 1473


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,636
Number of Sequences: 336
Number of extensions: 3104
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)