Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0731.Seq
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1448 - 27168389-27172021                                         31   0.60 
02_02_0457 + 10503801-10507358                                         29   2.4  
04_04_0008 + 22125707-22125828,22127122-22127197,22127297-221273...    28   7.4  

>08_02_1448 - 27168389-27172021
          Length = 1210

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = +1

Query: 376 LR*VNEFTAHLVLSGYWSPYNRCVFKVTERDRLATYVTRSRSSVTE-DRRGVSITRIES 549
           LR   + TA  VL GY++P+N  +F+VT   +L+  + +    V + +  G+S+ R ES
Sbjct: 89  LRRDGDATAGKVL-GYFTPHNPLLFRVTMSKKLSNVLEKMNKLVDKMNELGLSVDRTES 146


>02_02_0457 + 10503801-10507358
          Length = 1185

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = -3

Query: 622 ADRMVLELFPAPENNTPLYTFKFLYFQCV*YLLRAGPL*LTSDYASHKSLNDPAQLL*KH 443
           A+  + E F  PE + P+      YF+ +  + R+    +  +Y  H  L+D AQL+ KH
Sbjct: 498 AEIWIAEGFVEPEGSIPILDIGCQYFEEL--VNRSFFQKVHGNYVIHDLLHDMAQLVSKH 555

Query: 442 ICYM 431
            C++
Sbjct: 556 ECFI 559


>04_04_0008 +
           22125707-22125828,22127122-22127197,22127297-22127367,
           22127502-22127995,22128079-22128239,22128329-22128532,
           22129292-22129526,22129996-22130591
          Length = 652

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +3

Query: 93  NNLNSKLFYLTLRHRVTCVRAGQHY 167
           +N+++K++   + H  TCV +G+HY
Sbjct: 312 SNMSNKMWESLVEHAKTCVLSGKHY 336


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,970,861
Number of Sequences: 37544
Number of extensions: 351333
Number of successful extensions: 652
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)