Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0731.Seq
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37402| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_58211| Best HMM Match : ANF_receptor (HMM E-Value=0)                29   3.3  
SB_36857| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8e-05)              29   3.3  
SB_16050| Best HMM Match : zf-RanBP (HMM E-Value=4.9)                  28   5.7  
SB_41895| Best HMM Match : rve (HMM E-Value=0.00076)                   28   7.5  

>SB_37402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 45

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 309 EPSPAGDPSTSCTRRVEGRASRHLETPD*EEIL 211
           EP P G    S T RV   A+R  + P+ EE+L
Sbjct: 11  EPRPTGSIQVSFTHRVFKTAARESKAPEEEEVL 43


>SB_58211| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 1316

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 192  LSLNIFVGFPLNQESPGVERRAPQLFLYNWWTGRPPATALS 314
            L + +F+GF +++E  G     PQ+F     +G PP   +S
Sbjct: 1007 LGVAVFIGFLIHRERRGQPSFGPQVFQRGAGSGGPPVNDIS 1047


>SB_36857| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8e-05)
          Length = 576

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +2

Query: 140 HLCASRTTLSTLRHASRSLTKYICRISSQSGVSRCREARPSTLLVQLVDGSPAG 301
           ++C       T R++SR +   ICR  S+   +       +TLLV++++ +P G
Sbjct: 41  NVCRECLEKITARNSSRFVECPICRARSEIPQNGVNSFPTNTLLVRIIENTPGG 94


>SB_16050| Best HMM Match : zf-RanBP (HMM E-Value=4.9)
          Length = 520

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 385 VNEFTAHLVLSGYWSPYNRCVFKVTERDRLATYVTRSRSSVTEDRR 522
           V  FT HL  S YW+     +   T+  R+  +V R+ SS   + R
Sbjct: 275 VLSFTPHLETSDYWTAEEMSLDIATKEARVVNHVVRAFSSHLRNAR 320


>SB_41895| Best HMM Match : rve (HMM E-Value=0.00076)
          Length = 655

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = +2

Query: 125 STPPRHLCASRTTLSTLRHASRSLTKY---ICRISSQSGVSRCREARPSTLLVQLVDG 289
           ++PPR L +  T   +  H + S TKY    C +    G  R R   P  L  + +DG
Sbjct: 429 TSPPRSLWSYSTGARSPSHCAHSKTKYGDGYCYLCWDMGEERIRRPIPDRLDGERLDG 486


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,377,842
Number of Sequences: 59808
Number of extensions: 393082
Number of successful extensions: 725
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)