Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0731.Seq
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    26   0.36 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   3.4  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   7.8  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   7.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   7.8  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   7.8  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = +1

Query: 403 HLVLSGYWSPYNRCVFKVTERDRLATYVTRSRSSVTEDRRGVSITRIESKG 555
           HL +SG     N C  +V  R  L  Y+ +     TEDR   SI     KG
Sbjct: 306 HLSVSG--GALNDCHAEVVARRCLCEYLYKQLELHTEDRAAESILEPAKKG 354


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 313 HLVEFKKCLEINR 351
           HL+E+KK L+I R
Sbjct: 435 HLIEYKKMLKIKR 447


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 564 VYKGVLFSGAGNSSS 608
           +Y G L+ G GN SS
Sbjct: 30  IYPGTLWCGHGNKSS 44


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 564 VYKGVLFSGAGNSSS 608
           +Y G L+ G GN SS
Sbjct: 35  IYPGTLWCGHGNKSS 49


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 127 YATASPVCEQDNT 165
           + T +PVCE D+T
Sbjct: 152 FTTYTPVCEYDHT 164


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 564 VYKGVLFSGAGNSSS 608
           +Y G L+ G GN SS
Sbjct: 35  IYPGTLWCGHGNKSS 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,881
Number of Sequences: 438
Number of extensions: 3396
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)