Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0731.Seq
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01470.1 68418.m00060 expressed protein                             29   3.5  
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea...    27   8.1  

>At5g01470.1 68418.m00060 expressed protein
          Length = 241

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 313 HLVEFKKCLEINRGNGGFFLLLR*VNEFTAHLVLSGY 423
           +L+E ++CLEI  G G   + L+   EF   +  S Y
Sbjct: 73  YLIERRRCLEIGSGTGALAIFLK--KEFNLDITTSDY 107


>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
           sapiens]
          Length = 726

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +3

Query: 99  LNSKLFYLTLRHRVTCVRAGQHYQR*GTRLDLSLNIFVGFPLNQESPGVERRAPQ 263
           L S     T+ H V C   G HY   G    L+  +   FP  +  PG++ +A Q
Sbjct: 525 LKSDRCLFTIPHAVLCSEMGAHYSPCGRY--LAACVACVFPHGEIDPGLQTQAQQ 577


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,326,405
Number of Sequences: 28952
Number of extensions: 270793
Number of successful extensions: 492
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)