Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0730.Seq
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    27   0.19 
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    23   1.8  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   5.5  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   7.3  

>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 298 RKHIFKPSDVRSQQRYRKHIFLPN 369
           R HI+ P D+ +   Y +H+  PN
Sbjct: 497 RFHIYTPEDLFAPNTYNRHLVAPN 520


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 93  IHNIFYNTSKLITYF*LQNTAQFINDTIHYLPT*QMLRILDMI 221
           I++I   T K +  F  ++T ++  + IH+     +  I DMI
Sbjct: 132 IYSICVQTEKSVFDFLCRHTVEYFQNYIHFFYQLLLYLITDMI 174


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 351 FPVPLLTPHVRWF 313
           FPVP  T HVR F
Sbjct: 526 FPVPQKTKHVRAF 538


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 365 LTYLLI*NFN*NCFSVKSFIY 427
           L+YL++ +   NCF V   +Y
Sbjct: 357 LSYLILFSIGFNCFWVMKLLY 377


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,694
Number of Sequences: 336
Number of extensions: 2402
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)