Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0730.Seq
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83241-5|CAH10791.1| 1183|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z83241-4|CAB05819.3| 1181|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z81120-11|CAH10815.1| 1183|Caenorhabditis elegans Hypothetical p...    27   9.8  
Z81120-10|CAB03350.3| 1181|Caenorhabditis elegans Hypothetical p...    27   9.8  
Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z83241-5|CAH10791.1| 1183|Caenorhabditis elegans Hypothetical
           protein T12D8.9b protein.
          Length = 1183

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 146 KHRSIHKRHNSLFTY-MTNVKDSRHDNIK 229
           +HR +HKRH  +  Y MT+   S++D ++
Sbjct: 595 RHRRLHKRHAMMSRYGMTSGSASKYDKVE 623


>Z83241-4|CAB05819.3| 1181|Caenorhabditis elegans Hypothetical
           protein T12D8.9a protein.
          Length = 1181

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 146 KHRSIHKRHNSLFTY-MTNVKDSRHDNIK 229
           +HR +HKRH  +  Y MT+   S++D ++
Sbjct: 593 RHRRLHKRHAMMSRYGMTSGSASKYDKVE 621


>Z81120-11|CAH10815.1| 1183|Caenorhabditis elegans Hypothetical
           protein T12D8.9b protein.
          Length = 1183

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 146 KHRSIHKRHNSLFTY-MTNVKDSRHDNIK 229
           +HR +HKRH  +  Y MT+   S++D ++
Sbjct: 595 RHRRLHKRHAMMSRYGMTSGSASKYDKVE 623


>Z81120-10|CAB03350.3| 1181|Caenorhabditis elegans Hypothetical
           protein T12D8.9a protein.
          Length = 1181

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 146 KHRSIHKRHNSLFTY-MTNVKDSRHDNIK 229
           +HR +HKRH  +  Y MT+   S++D ++
Sbjct: 593 RHRRLHKRHAMMSRYGMTSGSASKYDKVE 621


>Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical
           protein F29G6.3c protein.
          Length = 1453

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = +1

Query: 289 DSTRKHIFKPSDVRSQQRYRK----HIFLPNLPSNLKFQLKL 402
           +S   H F P+ + ++++ R     H +LP+ P+N+K Q K+
Sbjct: 696 ESFHHHSFIPNSLEAERKSRSVERAHHYLPDSPANVKDQRKI 737


>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical
           protein F29G6.3b protein.
          Length = 1785

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = +1

Query: 289 DSTRKHIFKPSDVRSQQRYRK----HIFLPNLPSNLKFQLKL 402
           +S   H F P+ + ++++ R     H +LP+ P+N+K Q K+
Sbjct: 696 ESFHHHSFIPNSLEAERKSRSVERAHHYLPDSPANVKDQRKI 737


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,308,768
Number of Sequences: 27780
Number of extensions: 202467
Number of successful extensions: 369
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)