Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0730.Seq
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    25   0.69 
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   2.8  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   2.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.9  

>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 188 YMTNVKDSRHDNIKS*TLLYNLNFI 262
           Y++N+ +  +DN  +  L YN+N+I
Sbjct: 89  YISNISNYNNDNNYNKKLYYNINYI 113


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +2

Query: 188 YMTNVKDSRHDNIKS*TLLYNLNFI 262
           Y++N+ +  ++N  +  L YN+N+I
Sbjct: 89  YISNISNYNNNNNYNKKLYYNINYI 113


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +2

Query: 188 YMTNVKDSRHDNIKS*TLLYNLNFI 262
           Y++N+ +  ++N  +  L YN+N+I
Sbjct: 327 YISNISNYNNNNNYNKKLYYNINYI 351


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 57  IKHLTIIFIYKRIHNIFYNTSKLI 128
           I  L ++F Y RI+N   +T+K I
Sbjct: 258 IPMLVMLFFYWRIYNAAVSTTKAI 281


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 585 KIDRRDRARGNK*SS*PKDNF 523
           K+DR D  RG+   S  +DNF
Sbjct: 578 KLDRLDSLRGSTTDSQTEDNF 598


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,752
Number of Sequences: 438
Number of extensions: 2682
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)