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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0729.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21545| Best HMM Match : FerB (HMM E-Value=3.1e-30)                  30   2.1  
SB_24349| Best HMM Match : Exo_endo_phos (HMM E-Value=0.001)           28   6.3  
SB_9753| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.3  
SB_5218| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  

>SB_21545| Best HMM Match : FerB (HMM E-Value=3.1e-30)
          Length = 1142

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 594 GADLEAA*ACNKP*LIYTYDKPHRTMIR 677
           G DLE     N P +  TY+KPHR  +R
Sbjct: 320 GDDLERETMMNAPRMFITYEKPHRYQLR 347


>SB_24349| Best HMM Match : Exo_endo_phos (HMM E-Value=0.001)
          Length = 534

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +1

Query: 481 NGCKYESPSLNVATAQI*KQPFVDDIILSNIRSLQ*RLGQTSKLREHVTNPN*YTHMINH 660
           N C   S + ++    I    FV  ++LSN+RSL  ++    ++RE ++N N     I  
Sbjct: 63  NNCVQVSTTNSIQKTPISLNAFVPALLLSNVRSLAPKI---DEVREAISNANLDLACITE 119

Query: 661 TXL 669
           T L
Sbjct: 120 TWL 122


>SB_9753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 515

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +1

Query: 481 NGCKYESPSLNVATAQI*KQPFVDDIILSNIRSLQ*RLGQTSKLREHVTNPN*YTHMINH 660
           N C   S + ++    I    FV  ++LSN+RSL  ++    ++RE ++N N     I  
Sbjct: 63  NNCVQVSTTNSIQKTPISLNAFVPALLLSNVRSLAPKI---DEVREAISNANLDLACITE 119

Query: 661 TXL 669
           T L
Sbjct: 120 TWL 122


>SB_5218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 513 CCNCTDLKTTFCR*YNFIEYQVT 581
           CCN T   TT C  ++  +Y+VT
Sbjct: 292 CCNTTQCNTTQCNKHSVTQYRVT 314


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,912,709
Number of Sequences: 59808
Number of extensions: 362496
Number of successful extensions: 580
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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