Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0729.Seq
         (698 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT003178-1|AAO24933.1|  476|Drosophila melanogaster RH09265p pro...    29   4.6  
AY058534-1|AAL13763.1|  497|Drosophila melanogaster LD23951p pro...    29   4.6  
AE014297-2712|AAF55702.2|  497|Drosophila melanogaster CG4662-PA...    29   4.6  
AE014297-2711|AAN13811.1|  479|Drosophila melanogaster CG4662-PB...    29   4.6  

>BT003178-1|AAO24933.1|  476|Drosophila melanogaster RH09265p
           protein.
          Length = 476

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = +2

Query: 425 QLHLYL*KNSS*I-YTN*YKMVANMRAPVLMLQLHRFK--NNLLSMI*FYRISGHYS 586
           QLH +  + +  I Y N Y+ + N++  VL L+ H F   N+++S + F +I   Y+
Sbjct: 282 QLHFFGKRGTGVINYDNFYRFMDNLQTEVLELEFHEFSKGNSVISELDFAKILLRYT 338


>AY058534-1|AAL13763.1|  497|Drosophila melanogaster LD23951p
           protein.
          Length = 497

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = +2

Query: 425 QLHLYL*KNSS*I-YTN*YKMVANMRAPVLMLQLHRFK--NNLLSMI*FYRISGHYS 586
           QLH +  + +  I Y N Y+ + N++  VL L+ H F   N+++S + F +I   Y+
Sbjct: 285 QLHFFGKRGTGVINYDNFYRFMDNLQTEVLELEFHEFSKGNSVISELDFAKILLRYT 341


>AE014297-2712|AAF55702.2|  497|Drosophila melanogaster CG4662-PA,
           isoform A protein.
          Length = 497

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = +2

Query: 425 QLHLYL*KNSS*I-YTN*YKMVANMRAPVLMLQLHRFK--NNLLSMI*FYRISGHYS 586
           QLH +  + +  I Y N Y+ + N++  VL L+ H F   N+++S + F +I   Y+
Sbjct: 285 QLHFFGKRGTGVINYDNFYRFMDNLQTEVLELEFHEFSKGNSVISELDFAKILLRYT 341


>AE014297-2711|AAN13811.1|  479|Drosophila melanogaster CG4662-PB,
           isoform B protein.
          Length = 479

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = +2

Query: 425 QLHLYL*KNSS*I-YTN*YKMVANMRAPVLMLQLHRFK--NNLLSMI*FYRISGHYS 586
           QLH +  + +  I Y N Y+ + N++  VL L+ H F   N+++S + F +I   Y+
Sbjct: 285 QLHFFGKRGTGVINYDNFYRFMDNLQTEVLELEFHEFSKGNSVISELDFAKILLRYT 341


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,835,607
Number of Sequences: 53049
Number of extensions: 512914
Number of successful extensions: 1301
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)