Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0729.Seq
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21323-10|AAW30670.1|  805|Caenorhabditis elegans Hypothetical p...    29   4.2  
U21323-9|AAA62553.1|  971|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AC006769-15|AAF60587.1|  337|Caenorhabditis elegans Serpentine r...    28   5.6  

>U21323-10|AAW30670.1|  805|Caenorhabditis elegans Hypothetical
           protein C45G9.10b protein.
          Length = 805

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -1

Query: 596 PSLYCSDLIFDKIISSTKGCF*ICAVATLRLGLSYLQPFYTNWCKFTMSF 447
           PS   SDL+   +  +TK C     V +L  GL Y    Y N   F++ F
Sbjct: 419 PSTDYSDLVVISVNKTTKNCDPAITVRSLETGLIYEHAQYFNPMVFSIRF 468


>U21323-9|AAA62553.1|  971|Caenorhabditis elegans Hypothetical
           protein C45G9.10a protein.
          Length = 971

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -1

Query: 596 PSLYCSDLIFDKIISSTKGCF*ICAVATLRLGLSYLQPFYTNWCKFTMSF 447
           PS   SDL+   +  +TK C     V +L  GL Y    Y N   F++ F
Sbjct: 585 PSTDYSDLVVISVNKTTKNCDPAITVRSLETGLIYEHAQYFNPMVFSIRF 634


>AC006769-15|AAF60587.1|  337|Caenorhabditis elegans Serpentine
           receptor, class j protein19 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 404 IRKFHFLNFTIKQVLPLCRVLFSCKFIMYLISFRVG 297
           ++K  F   TI+ ++P+C     C F  Y  +F +G
Sbjct: 237 MQKQLFKALTIQTIIPICVSFMPCSFSFYGAAFNIG 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,382,931
Number of Sequences: 27780
Number of extensions: 287835
Number of successful extensions: 631
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)