Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0729.Seq
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    24   1.2  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.7  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    21   8.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.5  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 227 YRNLSHFFVSVVLKGSIYKPRYTGYT 150
           Y N    F  +     +Y PRYT YT
Sbjct: 213 YNNADDSFQRLTSSTFVYDPRYTKYT 238


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -3

Query: 222 ESFSFLCFRCAKGIYL*TAIYGV-YPPQNRDEQTSSCD-TTHFVNLALVLML 73
           ES  +L     +G  L  + Y   YPPQNR ++    +  T    LA++L L
Sbjct: 3   ESAVYLLGSEEEGNQLNRSFYSASYPPQNRSQEEDLWNLATDRAGLAILLFL 54


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 386 LNFTIKQVLPLCRVLFSCKFIMYL 315
           L +T+  +LP   + F C  + YL
Sbjct: 234 LFYTVNLILPTVLISFLCVLVFYL 257


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 411 HWNPKVPFPQF 379
           H  P  PFPQF
Sbjct: 152 HIGPSTPFPQF 162


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 390 FPQFYNKTGAASLSCFVFLQIYH 322
           F Q Y   G+  +  FV +Q+Y+
Sbjct: 201 FYQIYATLGSFYIPLFVMIQVYY 223


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,610
Number of Sequences: 438
Number of extensions: 3773
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)