Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0728.Seq
         (548 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3BST9 Cluster: Putative membrane protein precursor; n=...    34   1.9  
UniRef50_Q1N7S4 Cluster: Putative uncharacterized protein; n=2; ...    32   7.6  
UniRef50_Q9LV65 Cluster: Arabidopsis thaliana genomic DNA, chrom...    32   7.6  

>UniRef50_Q3BST9 Cluster: Putative membrane protein precursor; n=1;
           Xanthomonas campestris pv. vesicatoria str. 85-10|Rep:
           Putative membrane protein precursor - Xanthomonas
           campestris pv. vesicatoria (strain 85-10)
          Length = 143

 Score = 34.3 bits (75), Expect = 1.9
 Identities = 18/33 (54%), Positives = 19/33 (57%)
 Frame = +1

Query: 445 RSLVSGAASVG*AWGQRGVXVGPAPELXAEGRA 543
           R LV GAA  G  WG  GV  GPA  L A G+A
Sbjct: 82  RKLVIGAALFGIGWGLAGVCPGPAIALLATGQA 114


>UniRef50_Q1N7S4 Cluster: Putative uncharacterized protein; n=2;
           Sphingomonas|Rep: Putative uncharacterized protein -
           Sphingomonas sp. SKA58
          Length = 122

 Score = 32.3 bits (70), Expect = 7.6
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +2

Query: 383 YICCKQPTDPCSVR-LLKKCLS-EVLC-LERRAWG 478
           ++ C QP D  S+R L KKCL  E+LC +E   WG
Sbjct: 79  FLECVQPVDEASIRALTKKCLQIEILCGVEYDGWG 113


>UniRef50_Q9LV65 Cluster: Arabidopsis thaliana genomic DNA,
           chromosome 5, P1 clone:MJE7; n=4; Arabidopsis
           thaliana|Rep: Arabidopsis thaliana genomic DNA,
           chromosome 5, P1 clone:MJE7 - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 101

 Score = 32.3 bits (70), Expect = 7.6
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -1

Query: 218 PTSNCL--CNVCLQIDYVCICLLVNTIFIGFLVVNEKIKMIIVKRC 87
           PTS  L  CN     DY C+C   N+ ++G   V+ K+   + K C
Sbjct: 48  PTSPSLLCCNALKHADYTCLCGYKNSPWLGSFGVDPKLASSLPKEC 93


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 465,663,428
Number of Sequences: 1657284
Number of extensions: 8589384
Number of successful extensions: 22106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22103
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)