Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0728.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    26   3.2  
SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.2  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    25   5.6  
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ...    25   5.6  
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    25   7.3  

>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 373 KLGVHLL*TTNGPVFGETVEEVFIRSLVSGAAS 471
           KL  + + +TN PVFG  V+ V   +++S ++S
Sbjct: 158 KLSSNSIKSTNAPVFGTAVKNVTGENILSASSS 190


>SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 419 PNTGPLVVYNKCTPSFT 369
           PN GP  +Y +C  +FT
Sbjct: 236 PNYGPFYIYGQCVATFT 252


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 2   NHFIEKFLLLLNSIKNERLKHAFSQVS 82
           NH IE+F+LL N    E +   FS  S
Sbjct: 647 NHLIEEFMLLANRSVAEHISKNFSNNS 673


>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 492 LTPRSPHARRSRHKTSDKHFFN 427
           LTP+  H  +S  +   KHFF+
Sbjct: 177 LTPQETHKNKSFERDDQKHFFD 198


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 410 PCSVRLLKKCLSEVLCLERRAW 475
           P  + LLK  L+E LC + R W
Sbjct: 116 PLDISLLKTELNEALCSQIRVW 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,961,806
Number of Sequences: 5004
Number of extensions: 36949
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)