Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0728.Seq
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1591 + 27967065-27967090,27967236-27968054,27984940-279850...    28   5.6  
06_03_1207 + 28418473-28421073                                         28   5.6  
05_04_0020 - 17199627-17199947,17200129-17200203,17200301-172003...    27   7.5  

>07_03_1591 + 27967065-27967090,27967236-27968054,27984940-27985022,
            27985590-27985744,27985956-27986461,27986551-27986703,
            27987146-27987485,27987558-27987822,27987897-27988634,
            27989734-27989779,27989849-27990223,27991511-27991567,
            27991640-27992438
          Length = 1453

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 21/73 (28%), Positives = 30/73 (41%)
 Frame = +3

Query: 201  ETVRGRPDRRLVPKTSSSRQSQKVG*PLFLKKYFTESCYFQSRQKFHINVKCKNNLRKTR 380
            E V  RP  R + K  +S  ++KV       K  T  C +   +  H +  C NN    +
Sbjct: 916  ERVSRRPPPRSMTKGRASEPTEKVKLGARGDKKCTRGCGWCGLKVGHNSSTCPNNPANFK 975

Query: 381  RTFVVNNQRTRVR 419
            R    NN+  R R
Sbjct: 976  RIAEANNKGKRKR 988


>06_03_1207 + 28418473-28421073
          Length = 866

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 239 GHEPSVRPTSNCLCNVCLQIDYVCICLLVNTIFIGFLVVNEKIKMIIVKRCCD 81
           G  P+V   S+ +   C        CLL++ +    L  NE I  +++K CCD
Sbjct: 695 GLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCD 747


>05_04_0020 -
           17199627-17199947,17200129-17200203,17200301-17200384,
           17200483-17200562,17201354-17201508,17202602-17203215
          Length = 442

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 274 PTFWLWREDDVLGTSRRSGRPRTVSVTFVYKSTMYVY 164
           P  + W + +V+GT    G  + ++  F+  ST  VY
Sbjct: 201 PVHYKWHKTNVVGTLNMLGLAKRINARFLLTSTSEVY 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,131,534
Number of Sequences: 37544
Number of extensions: 225120
Number of successful extensions: 555
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)