Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0728.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1787| Best HMM Match : Peptidase_S9 (HMM E-Value=1.5e-08)           28   4.4  
SB_17924| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_9321| Best HMM Match : DDE (HMM E-Value=5.40004e-41)                28   5.8  
SB_38407| Best HMM Match : DDE (HMM E-Value=5.40004e-41)               28   5.8  
SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_1787| Best HMM Match : Peptidase_S9 (HMM E-Value=1.5e-08)
          Length = 1057

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 507 HXHXALTPRSPHARRSRHKTSDKHFFNSLTEHGSV 403
           H H  +TPRS H+ R    T D     S  ++G+V
Sbjct: 102 HNHGTVTPRSRHSPRRSRYTHDAIAVQSQYDYGTV 136


>SB_17924| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +1

Query: 199 QRQFEVGRTDGSCPKHHPRARAKRSDNHSF*KNTLQKVVTFSLGKNF 339
           +R  +V RTD S   HH     KR D H F K  + + V    G  F
Sbjct: 23  RRPLQVARTDRSNENHHSTGHKKR-DAHVFAKYGVPEQVIIDRGPPF 68


>SB_9321| Best HMM Match : DDE (HMM E-Value=5.40004e-41)
          Length = 700

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +2

Query: 410 PCSVRLLKKCLSEVLCLERRAWGERGVSAXWXWVRRPSXKRKGGRL 547
           PC  +L  +CL  +    RRAW    + A W        ++K  R+
Sbjct: 278 PCFAKLDSECLPVIWRANRRAWITTSIFADWLRTLDRKMRQKDRRI 323


>SB_38407| Best HMM Match : DDE (HMM E-Value=5.40004e-41)
          Length = 700

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +2

Query: 410 PCSVRLLKKCLSEVLCLERRAWGERGVSAXWXWVRRPSXKRKGGRL 547
           PC  +L  +CL  +    RRAW    + A W        ++K  R+
Sbjct: 278 PCFAKLDSECLPVIWRANRRAWITTSIFADWLRTLDRKMRQKDRRI 323


>SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 407 DPCSVRLLKKCLSEVLCL-ERRAWGERGVSAXWXWVRRPSXKRK 535
           D C   +L++ L E + L E+  + ++ +   W W +RP+  R+
Sbjct: 608 DECVRLVLERLLKEGITLNEKCEFSKQKIKFLWEWTQRPTPSRQ 651


>SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1176

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 516 RRTHXHXALTPRSPHARRSRH 454
           RR H H    PR+PH R   H
Sbjct: 191 RRIHAHTHAAPRTPHTRTFHH 211


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,500,196
Number of Sequences: 59808
Number of extensions: 281075
Number of successful extensions: 3195
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3194
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)