Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0728.Seq
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   3.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.2  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 257 PEPKGRITTLSKKILYRKLLLSV*AKISY 343
           PEP GR+   +   L ++L +SV  K+S+
Sbjct: 120 PEPFGRVRDHNISALCKELGISVVQKVSH 148


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 7/32 (21%), Positives = 16/32 (50%)
 Frame = +2

Query: 440 LSEVLCLERRAWGERGVSAXWXWVRRPSXKRK 535
           + E + +++R W ER     + W+ R   + +
Sbjct: 65  VQENIVIDKRPWWERYQPISYKWITRSGTREQ 96


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +1

Query: 253  RARAKRSDNHSF*KNTLQKVVTFSLGKNFILTLNVK 360
            + ++++    S  +   Q +VT   GK+ + T N+K
Sbjct: 971  KVQSQQQSQQSQQQQQQQTIVTNQAGKSILQTANIK 1006


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,431
Number of Sequences: 438
Number of extensions: 2653
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)