Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0728.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48490.1 68418.m05996 protease inhibitor/seed storage/lipid t...    32   0.22 
At5g48485.1 68418.m05995 protease inhibitor/seed storage/lipid t...    28   4.7  
At5g67420.1 68418.m08501 LOB domain protein 37 / lateral organ b...    27   8.3  
At4g15290.1 68417.m02341 cellulose synthase family protein simil...    27   8.3  
At3g49210.1 68416.m05378 expressed protein                             27   8.3  
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu...    27   8.3  

>At5g48490.1 68418.m05996 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           protease inhibitor/seed storage/LTP family domain
           PF00234
          Length = 101

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -1

Query: 218 PTSNCL--CNVCLQIDYVCICLLVNTIFIGFLVVNEKIKMIIVKRC 87
           PTS  L  CN     DY C+C   N+ ++G   V+ K+   + K C
Sbjct: 48  PTSPSLLCCNALKHADYTCLCGYKNSPWLGSFGVDPKLASSLPKEC 93


>At5g48485.1 68418.m05995 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           protease inhibitor/seed storage/LTP family domain
           PF00234
          Length = 102

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = -1

Query: 233 EPSVRPTSNCLCNVCLQIDYVCICLLVNTIFIGFLVVNEKIKMIIVKRC 87
           E    P+  C C      D+ C+C   N+ ++G   V+ ++   + K+C
Sbjct: 47  ENPTSPSQPC-CTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQC 94


>At5g67420.1 68418.m08501 LOB domain protein 37 / lateral organ
           boundaries domain protein 37 (LBD37) identical to LOB
           DOMAIN 37 [Arabidopsis thaliana] GI:17227170
          Length = 250

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 164 IYIHSRFVNKRYRDSSRSAGPTAR 235
           IY HSRF + R R +  S+ PT R
Sbjct: 151 IYHHSRFSSSRSRSTMDSSSPTKR 174


>At4g15290.1 68417.m02341 cellulose synthase family protein similar
           to Zea mays cellulose synthase-5 [gi:9622882], -4
           [gi:9622880]
          Length = 757

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -1

Query: 245 CFGHEPSVRPTSNCLCNVCLQIDYVCICLLVNTIFIGFLV 126
           C  H+ ++ P   CLC +   +   C+  L   + +GF V
Sbjct: 555 CLLHDSALFPKGPCLCTIVTLVGMHCLYSLWQFMSLGFSV 594


>At3g49210.1 68416.m05378 expressed protein
          Length = 518

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +1

Query: 208 FEVGRTDGSCPKHHPRARAKRSDNHSF*KNTLQKVVTFSLGKNFILTLNVKI 363
           F +G  D   P  H R RAKR  +    KN+L+  +TF  GK  + T  V++
Sbjct: 373 FSIGLRDD--PLQHLR-RAKRIIDRK--KNSLEAALTFVAGKFILKTFGVQV 419


>At1g07350.1 68414.m00783 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to GB:Y09506 from
           [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
           (1997))
          Length = 382

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +2

Query: 176 SRFVNKRYRDSSRSAGPTARAQNIILAPEPKGRITTLSKKILYRKLLLSV*AKIS 340
           SR  + RYR   RS  P  R ++   +P  +GR  + S +  Y +   SV   +S
Sbjct: 280 SRSYSPRYRARDRSCSPYYRGRDRSYSPHYQGRDRSYSPESRYYRRHRSVSGSVS 334


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,036,150
Number of Sequences: 28952
Number of extensions: 188986
Number of successful extensions: 453
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)