Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0727.Seq
         (697 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8T7L8 Cluster: Seroin 1; n=1; Bombyx mori|Rep: Seroin ...    78   2e-13
UniRef50_A5Z9E5 Cluster: Putative uncharacterized protein; n=1; ...    36   1.3  
UniRef50_Q08CK1 Cluster: Evolutionarily conserved signaling inte...    33   6.7  

>UniRef50_Q8T7L8 Cluster: Seroin 1; n=1; Bombyx mori|Rep: Seroin 1 -
           Bombyx mori (Silk moth)
          Length = 108

 Score = 77.8 bits (183), Expect = 2e-13
 Identities = 35/36 (97%), Positives = 35/36 (97%)
 Frame = -3

Query: 644 GFSDTFKMPEIPEIKSLEFDDIKTHVAGDNEQYTGE 537
           GFSDTFKM EIPEIKSLEFDDIKTHVAGDNEQYTGE
Sbjct: 31  GFSDTFKMREIPEIKSLEFDDIKTHVAGDNEQYTGE 66



 Score = 69.3 bits (162), Expect = 8e-11
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = -2

Query: 507 VNGKTVSSGGVSELTNDGKAVEEKVMEYKDGD 412
           VNGKTVSSGGVSELTNDGKAVEEKVMEYKDGD
Sbjct: 77  VNGKTVSSGGVSELTNDGKAVEEKVMEYKDGD 108



 Score = 33.1 bits (72), Expect = 6.7
 Identities = 13/16 (81%), Positives = 13/16 (81%)
 Frame = -1

Query: 691 ASAGFVWEDDDRFVPG 644
           ASAGFVWEDDD   PG
Sbjct: 16  ASAGFVWEDDDDLFPG 31


>UniRef50_A5Z9E5 Cluster: Putative uncharacterized protein; n=1;
           Eubacterium ventriosum ATCC 27560|Rep: Putative
           uncharacterized protein - Eubacterium ventriosum ATCC
           27560
          Length = 703

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
 Frame = -1

Query: 415 RLNKSSDYSRIKKFKSKILFHKR---GF*IVKNKTLMFFISALYSQIYVIVLFLFK-LCY 248
           ++NK SD  + KKF+ + L  K+    F ++K   +  F  A YS +Y+  L+ FK   Y
Sbjct: 26  KINKESDAKKSKKFRKEFLSQKQKDTTFLVIKIILVCMFAGA-YSMLYIWDLYTFKGKVY 84

Query: 247 FVTVCAXXXXXXXXXX*M*RKLKLNQVINCLFS 149
            + +             M  K+K+N+ +N + S
Sbjct: 85  PMRIVVPTLLFVSSSALMFVKIKVNRWVNFVIS 117


>UniRef50_Q08CK1 Cluster: Evolutionarily conserved signaling
           intermediate in Toll pathway, mitochondrial precursor;
           n=8; Euteleostomi|Rep: Evolutionarily conserved
           signaling intermediate in Toll pathway, mitochondrial
           precursor - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 452

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 17/72 (23%), Positives = 32/72 (44%)
 Frame = +3

Query: 399 LDLFNRHLCIP*PFLRRLFRHLSTXXXXXXXXXXXXPG*GTVTRLRLSGILLVISRDVSF 578
           LD+F + + +P  F++R+F H                  G +  +    +L+ I  + S 
Sbjct: 146 LDVFPKEVFVPQNFIQRMFNHYPRQQECGVQVLEQMENYGVMPNIETKVLLVQIFGEKSH 205

Query: 579 NIIKFKRLYLWY 614
            I KF+R+  W+
Sbjct: 206 PIRKFQRIMYWF 217


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 551,963,810
Number of Sequences: 1657284
Number of extensions: 9444638
Number of successful extensions: 23958
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23936
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)