Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0727.Seq
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0610 + 24335153-24337724,24337835-24338256                       30   2.0  
05_02_0030 + 5826065-5826092,5826307-5828309,5828412-5828732,582...    28   6.2  
04_04_1657 - 35102751-35102868,35102987-35103504,35104065-351042...    28   8.1  

>02_04_0610 + 24335153-24337724,24337835-24338256
          Length = 997

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -1

Query: 601 SLLNLMILKLTSREITSNIPESLSR 527
           +L  L+ LKLTS ++T NIP +L R
Sbjct: 481 NLRQLVYLKLTSNKLTGNIPNALDR 505


>05_02_0030 +
           5826065-5826092,5826307-5828309,5828412-5828732,
           5828821-5828907,5828981-5829583,5829680-5829844,
           5829941-5830235,5830320-5830534,5830621-5830926,
           5831200-5831263,5831384-5831623,5831756-5831853
          Length = 1474

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 522 QFLIQVNGKTVSSGGVSELTNDGKAVEEKVMEYKD 418
           + L+  NG+    G  SEL   G A E+ V  +KD
Sbjct: 811 KILVMENGEITQEGTYSELLQSGTAFEQLVNAHKD 845


>04_04_1657 -
           35102751-35102868,35102987-35103504,35104065-35104211,
           35104289-35106262,35106964-35107089,35107178-35107264,
           35107335-35107424,35107725-35107811,35108248-35108300,
           35109339-35109387
          Length = 1082

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 190 RKLKLNQVINCLFSKRTLLFQQYLRP 113
           + LKL+ V   L  +RTL+FQ++L P
Sbjct: 77  KSLKLSSVSRVLSGQRTLVFQRFLLP 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,967,827
Number of Sequences: 37544
Number of extensions: 230598
Number of successful extensions: 607
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)