Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0727.Seq
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.69 
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   8.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -3

Query: 620 PEIP-EIKSLEFDDIKTHVA-GDNEQYTGE 537
           PEI  E++ +E+DDIKT ++ G N+    E
Sbjct: 290 PEIKKEVEDMEYDDIKTELSTGMNDDIPPE 319


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = -3

Query: 260 QIVLFCDCLCENIN 219
           ++ L+C+C+ +N N
Sbjct: 58  KVQLYCECILKNFN 71


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 287 NLRNSSFFVQIVLFCD 240
           NLR+   FV + L CD
Sbjct: 24  NLRDDEDFVDVTLACD 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,349
Number of Sequences: 438
Number of extensions: 2833
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)