Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0725.Seq
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 144 1e-35
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 82 6e-17
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 77 3e-15
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 71 1e-13
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 63 3e-11
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 54 2e-08
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch... 46 7e-06
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 38 0.001
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 36 0.006
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo... 34 0.017
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 31 0.16
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 29 0.48
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 28 1.1
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 27 2.6
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce... 27 2.6
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 27 3.4
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 27 3.4
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 27 3.4
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 26 6.0
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 7.9
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 144 bits (348), Expect = 1e-35
Identities = 64/83 (77%), Positives = 75/83 (90%)
Frame = +3
Query: 255 GNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTD 434
GNGTIDF EFLTMMARKMKDTD+EEE+REAF+VFDKDGNG+I+ EL HV+T+LGE+L+
Sbjct: 61 GNGTIDFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQ 120
Query: 435 EEVDEMIREADIDGDGQVNYEEF 503
EEV +MIREAD DGDG +NYEEF
Sbjct: 121 EEVADMIREADTDGDGVINYEEF 143
Score = 94.7 bits (225), Expect = 1e-20
Identities = 44/55 (80%), Positives = 50/55 (90%)
Frame = +1
Query: 91 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAE 255
LT+EQIAEF+EAFSLFD+D DG IT+ ELG VMRSLGQ+PT AELQDMINEVDA+
Sbjct: 6 LTDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDAD 60
Score = 62.9 bits (146), Expect = 4e-11
Identities = 31/73 (42%), Positives = 47/73 (64%)
Frame = +3
Query: 291 MMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADI 470
M R + D + E REAF +FD+D +G I++ EL VM +LG+ T E+ +MI E D
Sbjct: 1 MTTRNLTD-EQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDA 59
Query: 471 DGDGQVNYEEFVT 509
DG+G +++ EF+T
Sbjct: 60 DGNGTIDFTEFLT 72
Score = 54.4 bits (125), Expect = 1e-08
Identities = 27/59 (45%), Positives = 39/59 (66%)
Frame = +1
Query: 79 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAE 255
M D EE++ +EAF +FDKDG+G IT +EL V+ SLG+ ++ E+ DMI E D +
Sbjct: 78 MKDTDNEEEV---REAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTD 133
Score = 32.7 bits (71), Expect = 0.052
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = +3
Query: 249 RGGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTN 413
+ GNG I E LT + + + S+EE+ + R D DG+G I+ E V+++
Sbjct: 96 KDGNGYITVEE-LTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEFSRVISS 149
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 109 AEFKEAFSLFDKDGDGTITTKELGTVM-RSLGQNPTEAELQDMINEVDAE 255
AE ++ + D DG+GTI E T+M R + E E+++ D +
Sbjct: 48 AELQDMINEVDADGNGTIDFTEFLTMMARKMKDTDNEEEVREAFKVFDKD 97
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 82.2 bits (194), Expect = 6e-17
Identities = 37/80 (46%), Positives = 55/80 (68%)
Frame = +3
Query: 267 IDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVD 446
ID +F++ ++ K+++T+SEEE +AFRVFDKD +G+I A+ M LGEKL+D EV
Sbjct: 58 IDEKKFMSFVSNKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQ 117
Query: 447 EMIREADIDGDGQVNYEEFV 506
M++EAD G +Y +FV
Sbjct: 118 LMVQEADPTNSGSFDYYDFV 137
Score = 56.0 bits (129), Expect = 5e-09
Identities = 27/51 (52%), Positives = 36/51 (70%)
Frame = +1
Query: 94 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEV 246
++EQ E KEAF L+D D DG I T +G+V+RSLG N T+AEL + NE+
Sbjct: 4 SKEQTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNEL 54
Score = 43.2 bits (97), Expect = 4e-05
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Frame = +1
Query: 73 STMADQLTE-EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVD 249
S ++++L E E E+ +AF +FDKD G I T + M++LG+ ++ E+Q M+ E D
Sbjct: 65 SFVSNKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEAD 124
Score = 35.5 bits (78), Expect = 0.007
Identities = 18/64 (28%), Positives = 36/64 (56%)
Frame = +3
Query: 318 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 497
+ +E++EAF ++D D +G I + + V+ +LG +TD E+ ++ E D + +
Sbjct: 6 EQTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNELG-DAIDEKKFM 64
Query: 498 EFVT 509
FV+
Sbjct: 65 SFVS 68
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 76.6 bits (180), Expect = 3e-15
Identities = 34/84 (40%), Positives = 51/84 (60%)
Frame = +3
Query: 255 GNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTD 434
G G + +F+ +M K+ + D EEI+ AF +FD D G IS LR V L E + D
Sbjct: 86 GKGYLQMEDFVRVMTEKIVERDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNENIDD 145
Query: 435 EEVDEMIREADIDGDGQVNYEEFV 506
+E++ MI E D+D DG++N +EF+
Sbjct: 146 QELEAMIEEFDLDQDGEINEQEFI 169
Score = 47.2 bits (107), Expect = 2e-06
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = +1
Query: 88 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVD 249
++TEEQ + EAF LFD D D I EL MR+LG N ++E+ ++ + D
Sbjct: 30 EITEEQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFD 83
Score = 46.0 bits (104), Expect = 5e-06
Identities = 23/63 (36%), Positives = 35/63 (55%)
Frame = +3
Query: 318 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 497
+ ++I EAF++FD D + I ELR M LG EV +++R+ D G G + E
Sbjct: 34 EQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQME 93
Query: 498 EFV 506
+FV
Sbjct: 94 DFV 96
Score = 31.9 bits (69), Expect = 0.091
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +3
Query: 258 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMT-NLGEKLTD 434
+ ID+ E M R + + E+ + R FDK G G++ + VMT + E+
Sbjct: 51 DNAIDYHELRAAM-RALGFNAEKSEVLKILRDFDKTGKGYLQMEDFVRVMTEKIVERDPL 109
Query: 435 EEVDEMIREADIDGDGQVN 491
EE+ D D G+++
Sbjct: 110 EEIKRAFELFDDDETGKIS 128
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 71.3 bits (167), Expect = 1e-13
Identities = 36/82 (43%), Positives = 54/82 (65%), Gaps = 2/82 (2%)
Frame = +3
Query: 267 IDFPEFLTMMARKMK-DTDSE-EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEE 440
+D +FL ++ R D + EE + F+VFDKD G I ELR+V+T+LGEKL++EE
Sbjct: 55 VDMEQFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEE 114
Query: 441 VDEMIREADIDGDGQVNYEEFV 506
+DE+++ + DG VNY +FV
Sbjct: 115 MDELLKGVPVK-DGMVNYHDFV 135
Score = 49.2 bits (112), Expect = 6e-07
Identities = 21/47 (44%), Positives = 33/47 (70%)
Frame = +1
Query: 115 FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAE 255
+K+AFSLFD+ G G I +G ++R+ GQNPT AE+ ++ + + AE
Sbjct: 8 YKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIESTLPAE 54
Score = 37.9 bits (84), Expect = 0.001
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 112 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAEE 258
EF + F +FDKD G I EL V+ SLG+ + E+ +++ V ++
Sbjct: 78 EFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVKD 126
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 336 REAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEM 452
++AF +FD+ G G I + ++ G+ T E+ E+
Sbjct: 9 KQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEI 47
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 63.3 bits (147), Expect = 3e-11
Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 5/88 (5%)
Frame = +3
Query: 255 GNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVM-----TNLG 419
G G +DF EF+ ++ + EE+++ AF+++D D +G+IS EL V+ TNL
Sbjct: 69 GGGDVDFQEFINSLSVFSVHGNKEEKLKFAFKIYDIDRDGYISNGELYLVLKMMVGTNLR 128
Query: 420 EKLTDEEVDEMIREADIDGDGQVNYEEF 503
E + VD+ I E D D DG++++EEF
Sbjct: 129 EDQLQQIVDKTIMEVDKDRDGKISFEEF 156
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 54.0 bits (124), Expect = 2e-08
Identities = 24/54 (44%), Positives = 35/54 (64%)
Frame = +1
Query: 88 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVD 249
QLT QI E KEAF+L DKDGDG I +++ T++ SL Q+ +E + M ++
Sbjct: 41 QLTSSQIQELKEAFALLDKDGDGNIGREDVKTMLTSLNQDASEDSINHMFESIN 94
Score = 44.0 bits (99), Expect = 2e-05
Identities = 23/83 (27%), Positives = 42/83 (50%)
Frame = +3
Query: 258 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE 437
N I+ FLT M + ++ EAF FD +G I + +R ++++G+++ +
Sbjct: 94 NPPINLAAFLTAMGSMLCRISPRNDLLEAFSTFDDTQSGKIPISTMRDALSSMGDRMDPQ 153
Query: 438 EVDEMIREADIDGDGQVNYEEFV 506
EV+ ++R G YE+FV
Sbjct: 154 EVESILR--SYTSHGVFYYEKFV 174
Score = 38.3 bits (85), Expect = 0.001
Identities = 13/42 (30%), Positives = 30/42 (71%)
Frame = +3
Query: 327 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEM 452
+E++EAF + DKDG+G I +++ ++T+L + +++ ++ M
Sbjct: 48 QELKEAFALLDKDGDGNIGREDVKTMLTSLNQDASEDSINHM 89
>SPAC1687.14c |||EF hand family protein, unknown
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 45.6 bits (103), Expect = 7e-06
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +3
Query: 294 MARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADID 473
M+ K + +EE EAF +FD G+I +LR LGE LT E++ M+ D+
Sbjct: 1 MSVSTKRLEMDEEAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLML---DLA 57
Query: 474 G-DGQVNYEEF 503
G +G+V+ EEF
Sbjct: 58 GTNGKVSREEF 68
Score = 32.3 bits (70), Expect = 0.069
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +1
Query: 100 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMIN 240
E E +EAF LFD G I ++L LG+N T+ +LQ M++
Sbjct: 9 EMDEEAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLMLD 55
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 37.9 bits (84), Expect = 0.001
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 12/94 (12%)
Frame = +3
Query: 258 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGE----- 422
NG IDF EF+ ++ + + +++ AF+++D D NG IS E+ ++ + +
Sbjct: 77 NGYIDFKEFICALSVTSRG-ELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSM 135
Query: 423 -KLTDEE------VDEMIREADIDGDGQVNYEEF 503
KL ++E V+++ D + DGQ+ EEF
Sbjct: 136 VKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEF 169
Score = 30.7 bits (66), Expect = 0.21
Identities = 18/83 (21%), Positives = 37/83 (44%)
Frame = +3
Query: 258 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE 437
+G ++ EF + + D F VFD D NG+I E ++ ++
Sbjct: 40 SGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFKEFICALSVTSRGELND 99
Query: 438 EVDEMIREADIDGDGQVNYEEFV 506
++ + D+D +G ++Y+E +
Sbjct: 100 KLIWAFQLYDLDNNGLISYDEML 122
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 35.9 bits (79), Expect = 0.006
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +3
Query: 294 MARKMKDTDSEE--EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 467
+ +K + +EE + + F D DG G++ + +K + +EV E IRE +
Sbjct: 6 LQKKYPELTNEEILTLTDQFNKLDVDGKGYLDQPTTIKAFED-SKKGSYDEVREAIREVN 64
Query: 468 IDGDGQVNYEEFV 506
+D G+V E+FV
Sbjct: 65 VDSSGRVEPEDFV 77
>SPBC11G11.02c |end3||actin cortical patch component End3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 375
Score = 34.3 bits (75), Expect = 0.017
Identities = 18/64 (28%), Positives = 38/64 (59%)
Frame = +3
Query: 312 DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 491
D + + E FR + + NG++S ++ V+ + KL+ ++++++ ADID DG +
Sbjct: 2 DPQEKNKYWEIFRGLNPE-NGYLSGSKAAGVLRS--SKLSSDKLEKIWDLADIDDDGMFD 58
Query: 492 YEEF 503
++EF
Sbjct: 59 FDEF 62
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 31.1 bits (67), Expect = 0.16
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = -1
Query: 479 VAVDIGLANHLVDLLVSEFLSEVGHDVAQLGRGDEAVAVLVEDAE 345
V++ I L ++ L+ FLSE + +G+ DEA+ V+ ++AE
Sbjct: 180 VSIGINLLWGIITLVGVSFLSESPRYLVSIGKDDEAIQVMCKNAE 224
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 29.5 bits (63), Expect = 0.48
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -1
Query: 479 VAVDIGLANHLVDLLVSEFLSEVGHDVAQLGRGDEAVAVLVEDAEGLAD 333
V++ I L ++ ++ FL E + Q+G+ +EAV VL E AE D
Sbjct: 184 VSIGINLLWGIITMIGILFLPESPRYLIQVGKDEEAVRVLSESAELFPD 232
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +1
Query: 85 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--QNPTEAELQDMINEV 246
D+ E A + +S+FD+D +G IT +E+ +G + A L+D+ + +
Sbjct: 538 DETGEVDNATLEACYSIFDRDLNGDITCEEIELACVEIGKERKSISASLRDLNDSI 593
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 402 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 500
V + E+ +EE DEM E D +G+G EE
Sbjct: 170 VQPDADEEEEEEEADEMEEEFDEEGEGDEEEEE 202
>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +3
Query: 297 ARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADID 473
AR++K I + ++ D+ + +A EL V LG+ +TD VDE +A+++
Sbjct: 113 ARQLKSQSKNVSIEKIEKLQDEIQDYMDAAGELNEV---LGQNMTDINVDEEELDAELE 168
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Frame = +3
Query: 354 FDKDGNGFISAAELRH--------VMTNLGEKLTDEEVDEMIREAD 467
FD D NG ++ + L +TN +L+ EE+D M+ EA+
Sbjct: 476 FDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVSEAE 521
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -2
Query: 229 LEVRLLWGSVLATSSRCPALWS*WCHR 149
LE++ WGS+ A + +W+ W R
Sbjct: 850 LEMKNYWGSISALCDKMSEIWADWVQR 876
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Frame = +3
Query: 354 FDKDGNGFISAAELRH--------VMTNLGEKLTDEEVDEMIREAD 467
FD D NG ++ + L +TN +L+ EE+D M+ EA+
Sbjct: 476 FDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVAEAE 521
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 491 IDLAVAVDIGLANHLVDLLVSEFLSEVGHDVAQL 390
+D++V +D+ +H L S LS HDV Q+
Sbjct: 28 VDVSVDIDVIFPDHTQTLSFSLLLSNTIHDVRQV 61
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 121 EAFSLFDKDGDGTITTKELGTVMR 192
+ F FD+D DG + +EL + R
Sbjct: 311 DLFYQFDRDNDGALNNEELSALFR 334
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,314,435
Number of Sequences: 5004
Number of extensions: 40503
Number of successful extensions: 153
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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