Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0725.Seq
         (698 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1 pro...    56   1e-09
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   7.0  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    23   9.2  

>AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1
           protein protein.
          Length = 160

 Score = 56.0 bits (129), Expect = 1e-09
 Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
 Frame = +3

Query: 243 SRRGGNGTIDFPEFLTMMA--RKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL 416
           +++ G   I F EFL + +  +K K+    E+  E  +++DK+ +G +  AEL H +T L
Sbjct: 55  TQKRGEKKIKFEEFLPIFSQVKKEKEQGCFEDFLECLKLYDKNEDGTMLLAELTHSLTAL 114

Query: 417 GEKLTDEEVDEMIREA--DIDGDGQVNYEEFV 506
           GE+L D E+D ++++     D DG + Y  F+
Sbjct: 115 GERLDDVELDNVMKDCMDPEDDDGNIPYAPFL 146



 Score = 37.9 bits (84), Expect = 3e-04
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = +1

Query: 79  MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPT 213
           MA+ L + +I + +  FS++D +G G +   +LG  +R+L  NPT
Sbjct: 1   MANDLKDVEIEKAQFVFSVYDWEGSGQMDAMDLGNALRALNLNPT 45



 Score = 33.9 bits (74), Expect = 0.005
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +1

Query: 112 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINE-VDAEE 258
           +F E   L+DK+ DGT+   EL   + +LG+   + EL +++ + +D E+
Sbjct: 86  DFLECLKLYDKNEDGTMLLAELTHSLTALGERLDDVELDNVMKDCMDPED 135



 Score = 31.5 bits (68), Expect = 0.026
 Identities = 20/71 (28%), Positives = 38/71 (53%)
 Frame = +3

Query: 294 MARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADID 473
           MA  +KD + E+  +  F V+D +G+G + A +L + +  L    T E + +M       
Sbjct: 1   MANDLKDVEIEKA-QFVFSVYDWEGSGQMDAMDLGNALRALNLNPTIELIGKM-GGTQKR 58

Query: 474 GDGQVNYEEFV 506
           G+ ++ +EEF+
Sbjct: 59  GEKKIKFEEFL 69


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 357  DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQ 485
            D++GN      E     T +G +++  +VD  +RE +    GQ
Sbjct: 1061 DQEGNDMEREVETSDEFTGIGIRVSFTQVDAEMREMNQLSGGQ 1103


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 104 RSPSLRRHSHCSTKTAMAPSRPKS 175
           RSP  RR S  +  T+   SRP S
Sbjct: 272 RSPPARRRSRSTRPTSWPRSRPTS 295


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 603,006
Number of Sequences: 2352
Number of extensions: 10184
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71086350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)