Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0724.Seq
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0613 - 4571689-4572348 33 0.20
01_06_0456 + 29521282-29522064 32 0.35
05_05_0272 - 23738514-23738817,23739382-23740748 31 0.61
06_03_1448 + 30235336-30236763 29 3.2
06_03_1443 + 30182018-30183445 29 3.2
06_03_1440 + 30166515-30167942 29 3.2
06_03_1437 + 30151030-30152457 29 3.2
06_03_1429 + 30100834-30102261 29 3.2
06_03_1425 + 30084383-30085810 29 3.2
06_03_1420 - 30053713-30055140 29 3.2
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 3.2
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 28 5.6
04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814 28 5.6
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 28 5.6
06_03_1311 - 29241884-29242054,29242802-29242879,29242968-292430... 27 9.9
>01_01_0613 - 4571689-4572348
Length = 219
Score = 32.7 bits (71), Expect = 0.20
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = -2
Query: 307 LALGHLRYSLTDVPPQSNPRLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIID 131
L LGH YSL PP S P + N ++ ++S SA + +G + R+ +++D
Sbjct: 51 LELGHSVYSLPLPPPPSQPVVVAGGN--NDQYGVSSSSSAAATTSRIGFRTRSEVEVLD 107
>01_06_0456 + 29521282-29522064
Length = 260
Score = 31.9 bits (69), Expect = 0.35
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = -3
Query: 249 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTA 127
AW+C P +G+RG +RRR P S R R +T+RP + S A
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58
>05_05_0272 - 23738514-23738817,23739382-23740748
Length = 556
Score = 31.1 bits (67), Expect = 0.61
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -2
Query: 298 GHLRYS-LTDVPPQSNPRLAVSSNRITREF*TATSVSATSPLCTLGTKH 155
G RY+ +TDVPP N L V N IT EF T + +P ++ + H
Sbjct: 398 GVFRYNQMTDVPPAVNGPLHVVPNVITAEFRTFIEIIFENPEKSMDSVH 446
>06_03_1448 + 30235336-30236763
Length = 475
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 254 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 117
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1443 + 30182018-30183445
Length = 475
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 254 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 117
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1440 + 30166515-30167942
Length = 475
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 254 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 117
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1437 + 30151030-30152457
Length = 475
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 254 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 117
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1429 + 30100834-30102261
Length = 475
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 254 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 117
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1425 + 30084383-30085810
Length = 475
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 254 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 117
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1420 - 30053713-30055140
Length = 475
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 254 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 117
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 182 TTLHAWNETPCARRYY 135
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 146 GRTVFRSKR--AEW*RGGNARRRLKLPRDPVRGHCQAGI*LG 265
G+T+ R R A W RG A RR +LP G +AG LG
Sbjct: 36 GQTLTRGPRTCAVWRRGRAAVRRRRLPAASAEGGAKAGRSLG 77
>04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814
Length = 775
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 276 QMYRPSQIPAWQCPRTGSRGSFKRRRAFPPRHHSA 172
QM S+I P S G ++RR P RHH A
Sbjct: 4 QMQSRSRIRGRDPPPASSGGRYRRRSPSPRRHHRA 38
>03_05_1065 +
30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 27.9 bits (59), Expect = 5.6
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = -2
Query: 352 SFCPFAPREVSVLAELALGHLRYSLTDVPPQSNPRLAVSSNRITREF*TA-TSVSATSPL 176
+F P+ P LA + GH R+ + D + LA N+ R + +VSA + L
Sbjct: 371 AFHPYLP-----LATTSSGHRRFGMED-EIEEELSLAGIFNKGDRSYAVRRAAVSAYAAL 424
Query: 175 CTLGTKHRAPADIIDR 128
C + H AP + DR
Sbjct: 425 CAVLCAHEAPGGLPDR 440
>06_03_1311 -
29241884-29242054,29242802-29242879,29242968-29243049,
29243141-29243212,29243316-29243437,29243541-29243596,
29244264-29244333,29244435-29244518,29244599-29244667,
29244855-29244928,29245014-29245125,29245220-29245510
Length = 426
Score = 27.1 bits (57), Expect = 9.9
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Frame = -2
Query: 355 ASFCPFAPREVSVLAELAL-GHLRYSLTDVPPQSNPRLAVSSNRITREF*TATSVSATSP 179
AS F+P V +L + GH + P++ PR+ + R++ E A +V A S
Sbjct: 2 ASTVSFSPANVQMLQGRSCHGHAAFGGCSAVPRTGPRMRSVAVRVSSEQEAAPAVRAPSG 61
Query: 178 LCTLGTKHRAPAD-IIDRAPLPP 113
T AD + R P PP
Sbjct: 62 ----RTIEECEADAVAGRFPAPP 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,508,889
Number of Sequences: 37544
Number of extensions: 336278
Number of successful extensions: 966
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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