Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0724.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical p...    31   0.72 
Z83123-2|CAB05606.1| 1014|Caenorhabditis elegans Hypothetical pr...    31   0.72 
Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical p...    31   0.72 
U80453-9|AAT81206.1|  432|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    28   3.9  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical
            protein C25G4.10 protein.
          Length = 1208

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 343  PFAPREVSVLAELALGHLRYSLTDVPPQSNPRLAVS 236
            P    EV +LA  ALGH R   + +P  S PR + S
Sbjct: 1057 PSEDYEVGILAANALGHSRLMYSAIPKDSEPRRSAS 1092


>Z83123-2|CAB05606.1| 1014|Caenorhabditis elegans Hypothetical
           protein T04A11.3 protein.
          Length = 1014

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 343 PFAPREVSVLAELALGHLRYSLTDVPPQSNPRLAVS 236
           P    EV +LA  ALGH R   + +P  S PR + S
Sbjct: 863 PSEDYEVGILAANALGHSRLMYSAIPKDSEPRRSAS 898


>Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical
            protein C25G4.10 protein.
          Length = 1208

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 343  PFAPREVSVLAELALGHLRYSLTDVPPQSNPRLAVS 236
            P    EV +LA  ALGH R   + +P  S PR + S
Sbjct: 1057 PSEDYEVGILAANALGHSRLMYSAIPKDSEPRRSAS 1092


>U80453-9|AAT81206.1|  432|Caenorhabditis elegans Hypothetical
           protein C23H3.9d protein.
          Length = 432

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -2

Query: 277 TDVPPQSNPRLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPP-NRVS 101
           T   P+S+ R A  + R+   + T T  +A S      T  +AP  I DR   P  NR+S
Sbjct: 69  TTSEPRSHSRDARPTQRLPLTWSTVTPTAAPSQPIPTATSRKAPWYIKDRTAWPTYNRIS 128

Query: 100 NE 95
            E
Sbjct: 129 AE 130


>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = -2

Query: 169 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCY 35
           +GT+ +   DIID   +P N +S++ +  +++  R  ET++H+ +
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIF 328


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 208 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNET 92
           T+ +   TSP  T+GT   APA++      P N  S+ T
Sbjct: 623 TSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTT 661


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 208 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNET 92
           T+ +   TSP  T+GT   APA++      P N  S+ T
Sbjct: 679 TSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTT 717


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,526,487
Number of Sequences: 27780
Number of extensions: 256414
Number of successful extensions: 701
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)