Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0724.Seq
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   3.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   3.6  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   3.6  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   4.7  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   4.7  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 252 GFDWGGTSVKE*RRCPKASSARTETSRGA 338
           GF+    SVKE RR   A  ++ +  RGA
Sbjct: 309 GFNVKNISVKELRRGYVAGDSKNQPPRGA 337


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 65  SSLKNHYFHCFITYSVGRK 121
           SS    +FHC+     GRK
Sbjct: 420 SSFFQQFFHCYCPVRFGRK 438


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 252 GFDWGGTSVKE*RRCPKASSARTETSRGA 338
           GF+    SVKE RR   A  ++ +  RGA
Sbjct: 20  GFNVKNISVKELRRGYVAGDSKNQPPRGA 48


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 44  VGDRFARSSLKNHYFHCFI 100
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 44  VGDRFARSSLKNHYFHCFI 100
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,675
Number of Sequences: 438
Number of extensions: 3095
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)