Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0724.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51460.3 68418.m06381 trehalose-6-phosphate phosphatase (TPPA...    34   0.072
At5g51460.2 68418.m06380 trehalose-6-phosphate phosphatase (TPPA...    34   0.072
At5g51460.1 68418.m06379 trehalose-6-phosphate phosphatase (TPPA...    34   0.072
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-...    31   0.51 
At3g50060.1 68416.m05473 myb family transcription factor contain...    30   1.2  
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi...    28   4.7  
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ...    28   4.7  
At5g05360.2 68418.m00577 expressed protein similar to unknown pr...    27   6.2  
At5g05360.1 68418.m00578 expressed protein similar to unknown pr...    27   6.2  
At3g47910.1 68416.m05224 expressed protein low similarity to non...    27   6.2  
At4g39070.1 68417.m05533 zinc finger (B-box type) family protein...    27   8.3  
At4g29570.1 68417.m04216 cytidine deaminase, putative / cytidine...    27   8.3  
At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein si...    27   8.3  
At2g25730.1 68415.m03084 expressed protein                             27   8.3  

>At5g51460.3 68418.m06381 trehalose-6-phosphate phosphatase (TPPA)
           identical to trehalose-6-phosphate phosphatase (AtTPPA)
           [Arabidopsis thaliana] GI:2944178
          Length = 385

 Score = 33.9 bits (74), Expect = 0.072
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = -2

Query: 310 ELALGHLRYSLTDVPPQSNPRLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIID 131
           ++  GH    +TD PP SN RL +  NR+      AT++S  + L  L T  R    I+D
Sbjct: 2   DMKSGHSSPVMTDSPPISNSRLTIRQNRLPYSSAAATAISQNNNL--LLTVPRKKTGILD 59


>At5g51460.2 68418.m06380 trehalose-6-phosphate phosphatase (TPPA)
           identical to trehalose-6-phosphate phosphatase (AtTPPA)
           [Arabidopsis thaliana] GI:2944178
          Length = 384

 Score = 33.9 bits (74), Expect = 0.072
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = -2

Query: 310 ELALGHLRYSLTDVPPQSNPRLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIID 131
           ++  GH    +TD PP SN RL +  NR+      AT++S  + L  L T  R    I+D
Sbjct: 2   DMKSGHSSPVMTDSPPISNSRLTIRQNRLPYSSAAATAISQNNNL--LLTVPRKKTGILD 59


>At5g51460.1 68418.m06379 trehalose-6-phosphate phosphatase (TPPA)
           identical to trehalose-6-phosphate phosphatase (AtTPPA)
           [Arabidopsis thaliana] GI:2944178
          Length = 385

 Score = 33.9 bits (74), Expect = 0.072
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = -2

Query: 310 ELALGHLRYSLTDVPPQSNPRLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIID 131
           ++  GH    +TD PP SN RL +  NR+      AT++S  + L  L T  R    I+D
Sbjct: 2   DMKSGHSSPVMTDSPPISNSRLTIRQNRLPYSSAAATAISQNNNL--LLTVPRKKTGILD 59


>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
           GTP-binding protein GUF1 - Saccharomyces cerevisiae,
           PIR:S50374
          Length = 661

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -2

Query: 169 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHV 23
           LG +H  PA +I+R P PP  +S   +++++F     E    +CY S V
Sbjct: 231 LGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYVSVV 277


>At3g50060.1 68416.m05473 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain;
           identical to cDNA MYB-related protein (1107 bp)
           GI:1263096
          Length = 301

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 199 SSPFKTPA*SGSRTLPGGDLTGAVHLSKNNAGVLRPAQRGQKPRVEQKGK 348
           SS  + P  S S +LPG + T + H + NNA +    +   K  VE++G+
Sbjct: 195 SSSSEDPPTSLSLSLPGAENTSSSHNNNNNALMFPRFESQMKINVEERGE 244


>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
           like protein A, Arabidopsis thaliana, gb:Q07970
          Length = 790

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 133 DRAPLPPNRVSNETMKVVVFQRRSRET 53
           +RAPLP   V  E +  + F +R +ET
Sbjct: 7   NRAPLPSPNVKKEALSSIPFDKRRKET 33


>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
           F-box family protein
          Length = 379

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 184 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 47
           S LC LG+  R PAD I+   L   R+    M  +V  R S + I+
Sbjct: 54  SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98


>At5g05360.2 68418.m00577 expressed protein similar to unknown
           protein (pir||T02500)
          Length = 153

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 124 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 14
           P  P+R S      V  ++ +R+T SHL Y++ V L+
Sbjct: 20  PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56


>At5g05360.1 68418.m00578 expressed protein similar to unknown
           protein (pir||T02500)
          Length = 163

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 124 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 14
           P  P+R S      V  ++ +R+T SHL Y++ V L+
Sbjct: 20  PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56


>At3g47910.1 68416.m05224 expressed protein low similarity to
            nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
            GI:189036; contains Pfam profiles PF04780: Protein of
            unknown function (DUF629), PF04781: Protein of unknown
            function (DUF627)
          Length = 1290

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 172  TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 77
            T+G+ HR+ AD ++ +PLP   V + +   +V
Sbjct: 972  TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003


>At4g39070.1 68417.m05533 zinc finger (B-box type) family protein
           salt-tolerance protein - Arabidopsis thaliana,
           PID:e224078
          Length = 242

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 361 DQASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNPRLAVSSNR 227
           D+A+ C    R V    +LA  HLR+SLT    +  P   +   R
Sbjct: 20  DEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDAPLCDICGER 64


>At4g29570.1 68417.m04216 cytidine deaminase, putative / cytidine
           aminohydrolase, putative identical to cytidine deaminase
           homolog DesA [Arabidopsis thaliana] GI:4836443, cytidine
           deaminase 8 (CDA8) [Arabidopsis thaliana] GI:5080714;
           similar to cytidine deaminase (CDD) [Arabidopsis
           thaliana] GI:3046700; contains Pfam profile PF00383:
           Cytidine and deoxycytidylate deaminase zinc-binding
          Length = 293

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 388 AVPMR--TEHLDQASFCPFAPREVSVLAELALGHLRYSLTDVP 266
           A PMR    H++  S+  F P+ +S L   A+ H R  ++  P
Sbjct: 2   AQPMRFMLNHIETESYGAFTPQNLSPLINRAIPHTRAQISGSP 44


>At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein
           similar to beta-1,3-glucanase precursor GI:4097948 from
           [Oryza sativa]
          Length = 429

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -2

Query: 208 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKV 83
           TA +   T+   T+G  +  PA I     L P+R++ + + +
Sbjct: 18  TAIATPTTTSATTIGVTYSTPASISGTVQLSPDRIAEKVVSM 59


>At2g25730.1 68415.m03084 expressed protein 
          Length = 2464

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 283  SLTDVPPQSNPRLAVSSNRITREF*TATSVSAT 185
            S+T +PP   PR+ VS++R+ ++     +V A+
Sbjct: 1626 SVTIIPPPREPRITVSASRLRQKSRAGPAVKAS 1658


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,961,433
Number of Sequences: 28952
Number of extensions: 244860
Number of successful extensions: 619
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)