Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0723.Seq
         (748 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    26   0.37 
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    24   1.1  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    24   1.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.6  
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    23   2.6  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    23   2.6  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    23   2.6  

>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 660 EIGVECWSSFGNQEVHFXK-NRG 725
           E G+E W S GNQ++ F + N+G
Sbjct: 398 ETGIENWWSDGNQQIAFGRGNKG 420


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +3

Query: 666 GVECWSSFGNQEVHFXK-NRG 725
           G+E W S GNQ++ F + N+G
Sbjct: 399 GIENWWSDGNQQIAFGRGNKG 419


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +3

Query: 666 GVECWSSFGNQEVHFXK-NRG 725
           G+E W S GNQ++ F + N+G
Sbjct: 400 GIENWWSDGNQQIAFGRGNKG 420


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +2

Query: 149 NLKHYKEYSKSCLVVLNTDILTEMVRNI--EYVFEAKDIFP 265
           N+K  K   + C + +N   L E  RN+  + +F  +  FP
Sbjct: 718 NMKLEKVPGECCAICVNATSLVESNRNVPQKCIFNGQAYFP 758


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -2

Query: 285 LLHKPGQGKISFASKTYSIFLTISVRISVFNTTKHDLEYSL 163
           LL K G       S TYS+F+  ++ ++V+  T   +++ +
Sbjct: 237 LLQKMGNAYARTYS-TYSLFMMANITVAVYGFTSEIVDHGI 276


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -2

Query: 285 LLHKPGQGKISFASKTYSIFLTISVRISVFNTTKHDLEYSL 163
           LL K G       S TYS+F+  ++ ++V+  T   +++ +
Sbjct: 237 LLQKMGNAYARTYS-TYSLFMMANITVAVYGFTSEIVDHGI 276


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -2

Query: 285 LLHKPGQGKISFASKTYSIFLTISVRISVFNTTKHDLEYSL 163
           LL K G       S TYS+F+  ++ ++V+  T   +++ +
Sbjct: 237 LLQKMGNAYARTYS-TYSLFMMANITVAVYGFTSEIVDHGI 276


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,777
Number of Sequences: 336
Number of extensions: 3762
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)