Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0723.Seq
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    27   2.8  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    27   3.8  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    26   5.0  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    25   8.7  

>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 420 LALPNLIALQHIPLSPAGVIAKRPAPIALPTVAQPEWR 533
           L+L  L +  + P+ P G  A R  P  +P +A+P +R
Sbjct: 310 LSLIPLSSSPNHPIQPIGFPASRKTPTYVPPIARPYFR 347


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 353 NWVPGPPSRSTVSISLISNSRPLFYTSLVKEKYPLLRKHI 234
           N+  GP S S   + ++S  +P  +T  + E  PLL + +
Sbjct: 174 NFKEGPVSSSIQDVPVMSTEQPRMHTFSLSELVPLLSERL 213


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 206 YRCLIQLNTTWSIPCSV*DFKSYLMTSNDFNDNF 105
           +RC      T SIPC++        + ND+N NF
Sbjct: 85  FRCDCGTTRTHSIPCNLRKSVDECGSENDYNHNF 118


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 707 VDFLVPKTGPTLNPYLGSILFDL*RDFCRFRP 612
           V  ++P    TL+ Y GS +  L  DF  F P
Sbjct: 210 VSMIIPSIKQTLDFYSGSQILRLLNDFSMFNP 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,053,238
Number of Sequences: 5004
Number of extensions: 62152
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)