Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0723.Seq
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81594-1|CAB04745.1|  908|Caenorhabditis elegans Hypothetical pr...    32   0.50 
AC024859-3|AAK29969.2|  871|Caenorhabditis elegans Hypothetical ...    28   8.1  

>Z81594-1|CAB04745.1|  908|Caenorhabditis elegans Hypothetical
           protein T20F10.1 protein.
          Length = 908

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
 Frame = -3

Query: 407 HDVVKRRPVNCNTTHYRANWV--PGPPSRSTVSISLISNSRP------LFYTSLVKE 261
           H VVK  P N    ++  N    P PP++ST+SI  +S  R       L++TS+ K+
Sbjct: 247 HPVVKAPPPNPTMLNHNKNMAPPPPPPAKSTISIETMSEERKADNIQRLYHTSMDKK 303


>AC024859-3|AAK29969.2|  871|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.10 protein.
          Length = 871

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 335 PSRSTVSISLISNSRPLFYTSLV 267
           P+ S  +I + S SRP FYTSLV
Sbjct: 202 PTSSNWTIRVSSASRPFFYTSLV 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,754,421
Number of Sequences: 27780
Number of extensions: 345322
Number of successful extensions: 827
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)