Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0723.Seq
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   7.0  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   7.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   7.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.3  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -3

Query: 410 SHDVVKRRPVNCNTTHYRANWVPGPPSRSTVSISLIS 300
           S +  K++P +C+T  YR   V  P     V ++  S
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTPLFTPAVGVAAAS 596


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 700  SWFPKLDQHSTPISGXFFLIYKGIFAD 620
            SW P  + HS  I   + L Y+ I AD
Sbjct: 1131 SWQPPPNTHSNGIIQGYKLHYEPILAD 1157


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 700  SWFPKLDQHSTPISGXFFLIYKGIFAD 620
            SW P  + HS  I   + L Y+ I AD
Sbjct: 1127 SWQPPPNTHSNGIIQGYKLHYEPILAD 1153


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 152 LKHYKEYSKSCLVVLNTDILTEMVRNIEYVFEAKDI 259
           LK      ++C  +L  DIL   V   + V + KD+
Sbjct: 262 LKKLCPQEEACFRLLMNDILRPYVPEFKGVLDVKDV 297


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 152 LKHYKEYSKSCLVVLNTDILTEMVRNIEYVFEAKDI 259
           LK      ++C  +L  DIL   V   + V + KD+
Sbjct: 177 LKKLCPQEEACFRLLMNDILRPYVPEFKGVLDVKDV 212


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 152 LKHYKEYSKSCLVVLNTDILTEMVRNIEYVFEAKDI 259
           LK      ++C  +L  DIL   V   + V + KD+
Sbjct: 496 LKKLCPQEEACFRLLMNDILRPYVPEFKGVLDVKDV 531


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 689 WEPGSPLFXEPWDXQPSKGE 748
           WEP   L+   W  +PS  E
Sbjct: 574 WEPPRALWPTEWKVRPSTVE 593


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -1

Query: 700 SWFPKLDQHSTPISGXFFLIYKGIFADFGLLVK 602
           SW   +D+HS   +    +I    + +F L +K
Sbjct: 270 SWRNLMDEHSNRTNSDPRMILTEAYTEFNLTIK 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,469
Number of Sequences: 438
Number of extensions: 4475
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)