Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0723.Seq
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19190.1 68415.m02239 light-responsive receptor protein kinas...    29   2.5  
At2g02150.1 68415.m00151 pentatricopeptide (PPR) repeat-containi...    28   5.7  
At5g09410.1 68418.m01090 calmodulin-binding protein similar to a...    28   7.6  
At2g35350.1 68415.m04334 protein phosphatase 2C family protein /...    28   7.6  
At3g54430.1 68416.m06021 lateral root primordium (LRP) protein-r...    27   10.0 
At2g40000.1 68415.m04915 expressed protein                             27   10.0 
At1g27020.1 68414.m03294 expressed protein                             27   10.0 

>At2g19190.1 68415.m02239 light-responsive receptor protein kinase /
           senescence-responsive receptor-like serine/threonine
           kinase, putative (SIRK) similar to light repressible
           receptor protein kinase [Arabidopsis thaliana]
           gi|1321686|emb|CAA66376; contains Pfam profiles PF00069:
           Protein kinase domain and PF00560: Leucine Rich Repeat
          Length = 876

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 527 FRLRNCWKGDRCGPLRYYASWRKGDVLQGD 438
           +R++  W+GD C P+ Y  SW   D +Q D
Sbjct: 382 YRVKKNWQGDPCVPVDY--SWEGIDCIQSD 409


>At2g02150.1 68415.m00151 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1141

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
 Frame = -2

Query: 579 FNANFTKILNAYNLPFAIQAAQLLEGRSVRASSLL-RQLAKGGCAARRLSWVTPGFSQSR 403
           +NA     + A N+  A++    L+GR ++   LL      G C+  ++       ++ +
Sbjct: 343 YNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMK 402

Query: 402 RCKTTASEL*YDSL-*GELGTGPPLE----VDGIDKLDIE 298
            C   A+ L Y +L      +G P E    +D + +LDIE
Sbjct: 403 ECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIE 442


>At5g09410.1 68418.m01090 calmodulin-binding protein similar to
           anther ethylene-upregulated calmodulin-binding protein
           ER1 GI:11612392 from [Nicotiana tabacum]
          Length = 1007

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 342 GPPLEVDGIDKLDIEFAAALLHKPGQGKISFA 247
           G   ++D  D+L + FAA+    PGQG +S +
Sbjct: 791 GDDEKIDISDQLAVSFAASKTKNPGQGDVSLS 822


>At2g35350.1 68415.m04334 protein phosphatase 2C family protein /
           PP2C family protein similar to protein phosphatase-2c
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 783

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 149 NLKHYKEYSKSCLVVLNTDILTEMVRNIEYVFEAKDIFP 265
           +L+HY+       +VL++D L + + N+E V  A + FP
Sbjct: 683 SLRHYRLTENDQFMVLSSDGLYQYLSNVEVVSLAMEKFP 721


>At3g54430.1 68416.m06021 lateral root primordium (LRP)
           protein-related similar to lateral root primordium 1
           (LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
           profile PF05142: Domain of unknown function (DUF702)
          Length = 183

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 395 KRRPVNCNTTHYRANWVPGPPSRSTVSIS 309
           K R  NC  TH ++ W+P   +RS+ S S
Sbjct: 62  KSRGYNC-VTHVKSTWIPSSATRSSSSPS 89


>At2g40000.1 68415.m04915 expressed protein
          Length = 435

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 220 GKEYRICFRSKGYFSLTRLV*KSGREFDIKLIDTVDLEGGPGTQFA 357
           GK    CFRSKG   + ++     ++    L   VD  GGP  Q A
Sbjct: 303 GKNDAFCFRSKGLVEMMKMSKDLRQKVPAVLAVEVDPTGGPRLQEA 348


>At1g27020.1 68414.m03294 expressed protein
          Length = 308

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 410 WENPGVTQLNRLAAHPPFASW 472
           WE P  T  N+LA    FA+W
Sbjct: 163 WEKPTSTDFNQLAKESEFAAW 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,697,945
Number of Sequences: 28952
Number of extensions: 318238
Number of successful extensions: 744
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)