Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0721.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    29   0.34 
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    27   2.4  
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    27   2.4  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    26   4.2  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   4.2  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    26   4.2  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    25   9.7  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   9.7  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    25   9.7  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 9/60 (15%)
 Frame = -1

Query: 191 YFVGFQN-SEVMINRDNWGHSYCDVRGEILG------SSQD--EHQRKHLPKVFSSIKNE 39
           Y VG+ N + ++++   WGHS+ +V  E+L        +QD  E ++K+L ++ +S + +
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDIQEKEKKYLEEMEASYQEQ 201


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 222 TKYSSSIFSPLEHSNLFKVKLSAHLDTHRRAPR*DFD 332
           T + + I SPL    L +  LS H+ TH  AP   FD
Sbjct: 141 TDFEAGIDSPL----LCQASLSTHVKTHNNAPLTSFD 173


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = +3

Query: 114 TSNVAIRMPPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSPLEHSNLFKVKL 284
           T    +++   +P   + G+      +P    I  C KY S+ +S   HS L  ++L
Sbjct: 208 TRKFLVKLAKALPDAKFFGIFDW---DPHGLCIYSCFKYGSNAYSHEPHSQLRNLQL 261


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +3

Query: 183 NKIEPRSYSIIPCTKYSSSIFSPLEH 260
           N ++P+S +++P T +  SI SP ++
Sbjct: 29  NPVKPQSSNVVPGTSHIGSIKSPADY 54


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 146 NWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKNE 39
           NW   +  ++G I  SSQ E    +L KV  SI +E
Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDE 157


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 171 VLKTNKIEPRSYSIIPCTKYSSSIFSPLEHSNLFKVKLSAHLD 299
           +LKT  ++  S  I P     +   SPLEH  +F +     +D
Sbjct: 26  LLKTLGLKVTSIKIDPYMNIDAGTMSPLEHGEVFVLNDGGEVD 68


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 202 HILLFHARNIQAAFLARLSTLICSK*NCRPT 294
           +++LF+  +  + FL R+  ++C K    PT
Sbjct: 603 YVILFYEPDFDSIFLRRVLIILCKKLQEEPT 633


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 207 NMISVLFCWFSELRGND 157
           N +S+L C FS L GND
Sbjct: 476 NQLSLLKCTFSNLDGND 492


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 208 LLFHARNIQAAFLARLST 261
           LLF+  N+ +A L+RLST
Sbjct: 117 LLFNENNVDSALLSRLST 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,070,251
Number of Sequences: 5004
Number of extensions: 40502
Number of successful extensions: 97
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)