Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0721.Seq
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0178 + 2006369-2006494,2006582-2006664,2007693-2007819,200...    29   1.8  
11_02_0083 - 8116997-8117590,8118342-8118745,8119073-8119671,812...    27   7.5  

>04_01_0178 +
           2006369-2006494,2006582-2006664,2007693-2007819,
           2008579-2008638,2009606-2009735,2009821-2010047,
           2010226-2010318,2010395-2010466,2011392-2011532,
           2012045-2012047,2012387-2012443,2012909-2012995,
           2013081-2013116
          Length = 413

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = +3

Query: 129 IRMPPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSPLEHSNLFKVKLSAHLDTH 305
           I+M P  P  H+L     N     +    P   YSS+I  P  H+N F   +   L TH
Sbjct: 53  IKMVPPGP--HFLYYCSPNSYGQNNLHEKPHIDYSSTICDPFRHANEFAPTVGFFLTTH 109


>11_02_0083 -
           8116997-8117590,8118342-8118745,8119073-8119671,
           8120226-8120266
          Length = 545

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
 Frame = +1

Query: 301 LTEEHRDRILILNRRFLERRLTDDMLRKRVSITRGCGAPTA--RCTNATTSFLTATNF-- 468
           +T+   +    L+R+F  +RLTD++ R   S+T+   + T+      AT +F  A     
Sbjct: 355 MTKADPEAATTLHRQFARKRLTDELARNVKSLTQTYTSNTSLVAILMATITFAAAFTLPG 414

Query: 469 *YTAIGAXNYPXLVGXRLALQLFLV 543
            Y+         ++  +LA Q FL+
Sbjct: 415 GYSNDSGSEGLPVMAKKLAFQAFLI 439


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,421,577
Number of Sequences: 37544
Number of extensions: 263935
Number of successful extensions: 613
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)