Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0721.Seq
(548 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 1e-07
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 1e-07
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 1e-07
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 1e-07
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 5e-07
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 5e-06
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 8e-04
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.009
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.050
SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_36004| Best HMM Match : Ank (HMM E-Value=1.8e-08) 28 5.8
SB_197| Best HMM Match : LISCH7 (HMM E-Value=1.3) 27 7.6
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 7.6
>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 60.1 bits (139), Expect = 1e-09
Identities = 29/36 (80%), Positives = 30/36 (83%)
Frame = -3
Query: 108 SWIVARRTSAKAFAKGVFINQERKLEVRRRLDTALV 1
SWI RRT+AKAFAK VFINQERKLE RRR DT LV
Sbjct: 4 SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLV 39
>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 53.2 bits (122), Expect = 1e-07
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = -3
Query: 93 RRTSAKAFAKGVFINQERKLEVRRRLDTALV 1
RRT+AKAFAK VFINQERKLE RRR DT LV
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLV 39
>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 53.2 bits (122), Expect = 1e-07
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = -3
Query: 93 RRTSAKAFAKGVFINQERKLEVRRRLDTALV 1
RRT+AKAFAK VFINQERKLE RRR DT LV
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLV 39
>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 53.2 bits (122), Expect = 1e-07
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = -3
Query: 93 RRTSAKAFAKGVFINQERKLEVRRRLDTALV 1
RRT+AKAFAK VFINQERKLE RRR DT LV
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLV 39
>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 53.2 bits (122), Expect = 1e-07
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = -3
Query: 93 RRTSAKAFAKGVFINQERKLEVRRRLDTALV 1
RRT+AKAFAK VFINQERKLE RRR DT LV
Sbjct: 11 RRTTAKAFAKNVFINQERKLEDRRRSDTVLV 41
>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 51.2 bits (117), Expect = 5e-07
Identities = 25/30 (83%), Positives = 26/30 (86%)
Frame = -3
Query: 90 RTSAKAFAKGVFINQERKLEVRRRLDTALV 1
RT+AKAFAK VFINQERKLE RRR DT LV
Sbjct: 29 RTTAKAFAKNVFINQERKLEDRRRSDTVLV 58
>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 48.0 bits (109), Expect = 5e-06
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = -3
Query: 90 RTSAKAFAKGVFINQERKLEVRRRLDT 10
RT+AKAFAK VFINQERKLE RRR DT
Sbjct: 2 RTTAKAFAKNVFINQERKLEDRRRSDT 28
>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 40.7 bits (91), Expect = 8e-04
Identities = 21/32 (65%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
Frame = -3
Query: 93 RRTS-AKAFAKGVFINQERKLEVRRRLDTALV 1
R+T+ ++ AK VFINQERKLE RRR DT LV
Sbjct: 8 RKTNYCESIAKNVFINQERKLEDRRRSDTVLV 39
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -2
Query: 115 VKFLDRRKTNISESICQRCFHQSRTKV 35
VKFLD RKTN ESI + F K+
Sbjct: 2 VKFLDLRKTNYCESIAKNVFINQERKL 28
>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -2
Query: 115 VKFLDRRKTNISESICQRCFHQSRTKV 35
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
Score = 34.7 bits (76), Expect = 0.050
Identities = 18/32 (56%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = -3
Query: 93 RRTS-AKAFAKGVFINQERKLEVRRRLDTALV 1
R+T+ ++ + FINQERKLE RRR DT LV
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLV 39
>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -2
Query: 115 VKFLDRRKTNISESICQRCFHQSRTKV 35
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
Score = 34.7 bits (76), Expect = 0.050
Identities = 18/32 (56%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = -3
Query: 93 RRTS-AKAFAKGVFINQERKLEVRRRLDTALV 1
R+T+ ++ + FINQERKLE RRR DT LV
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLV 39
>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 37.1 bits (82), Expect = 0.009
Identities = 19/32 (59%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Frame = -3
Query: 93 RRTS-AKAFAKGVFINQERKLEVRRRLDTALV 1
R+T+ ++ + VFINQERKLE RRR DT LV
Sbjct: 8 RKTNYCESICQDVFINQERKLEDRRRSDTVLV 39
Score = 33.9 bits (74), Expect = 0.088
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -2
Query: 115 VKFLDRRKTNISESICQRCFHQSRTKV 35
VKFLD RKTN ESICQ F K+
Sbjct: 2 VKFLDLRKTNYCESICQDVFINQERKL 28
>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 34.7 bits (76), Expect = 0.050
Identities = 18/32 (56%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = -3
Query: 93 RRTS-AKAFAKGVFINQERKLEVRRRLDTALV 1
R+T+ ++ + FINQERKLE RRR DT LV
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLV 39
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 112 KFLDRRKTNISESICQRCFHQSRTKV 35
+ L RKTN ESICQ CF K+
Sbjct: 3 EILGFRKTNYCESICQECFINQERKL 28
>SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -3
Query: 513 ANKPRVIPSSNSGILKIGCG*KARSCICAPR-CR 415
+ KP+ S + I K+GCG K ++C+ P+ CR
Sbjct: 262 SGKPQPSASPSDKITKVGCG-KTKACVSEPKNCR 294
>SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 176 QNSEVMINRDNWGHSY-CDVRGEILGSSQDEHQRKHLP 66
Q EV +++ GH Y C GE++ S++D H+ +P
Sbjct: 7 QCKEVESSKEILGHPYVCAFAGEVIQSTEDVHKPSWIP 44
>SB_36004| Best HMM Match : Ank (HMM E-Value=1.8e-08)
Length = 349
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -3
Query: 492 PSSNSGILKIGCG*KARSCICAPR-CRCXASAGDT 391
PS +SGI I C + R+C C P C C S T
Sbjct: 99 PSRSSGI-SIDCSVRGRACTCKPMPCPCGDSCTRT 132
>SB_197| Best HMM Match : LISCH7 (HMM E-Value=1.3)
Length = 120
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 447 ARSCIC-APRCRCXASAGDTDTFAEHIVGE 361
A C C A RCRC A+ FA H+VGE
Sbjct: 53 AARCRCFAARCRCFAA--HCRCFAAHVVGE 80
>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1449
Score = 27.5 bits (58), Expect = 7.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 97 DDPRISPLTSQYEC 138
DDPR+SP + QY C
Sbjct: 241 DDPRVSPTSQQYAC 254
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,667,653
Number of Sequences: 59808
Number of extensions: 308010
Number of successful extensions: 914
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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