Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0721.Seq
         (548 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U06469-1|AAA53215.1|  524|Homo sapiens HEAAC1 protein.                 30   4.6  
U08989-1|AAA68628.1|  524|Homo sapiens glutamate transporter pro...    30   6.1  
AF074911-1|AAC27511.3|  524|Homo sapiens neuronal and epithelial...    30   6.1  

>U06469-1|AAA53215.1|  524|Homo sapiens HEAAC1 protein.
          Length = 524

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
 Frame = -2

Query: 250 GLKMLLEYFVHGIIEYDLGSILLVFRTPXXXXXXXXXXXXXXXLEVK----FLDRRKTNI 83
           GL+ +L YF   +I   LG +L+V   P                EV      LD  +   
Sbjct: 91  GLRAVLYYFCTTLIAVILGIVLVVSIKPGVTQKVGEIARTGSTPEVSTVDAMLDLIRNMF 150

Query: 82  SESICQRCFHQSRTK 38
            E++ Q CF Q +TK
Sbjct: 151 PENLVQACFQQYKTK 165


>U08989-1|AAA68628.1|  524|Homo sapiens glutamate transporter
           protein.
          Length = 524

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = -2

Query: 250 GLKMLLEYFVHGIIEYDLGSILLVFRTPXXXXXXXXXXXXXXXLEVK----FLDRRKTNI 83
           GL++++ YF   +I   LG +L+V   P                EV      LD  +   
Sbjct: 91  GLRVVVYYFCTTLIAVILGIVLVVSIKPGVTQKVGEIARTGSTPEVSTVDAMLDLIRNMF 150

Query: 82  SESICQRCFHQSRTK 38
            E++ Q CF Q +TK
Sbjct: 151 PENLVQACFQQYKTK 165


>AF074911-1|AAC27511.3|  524|Homo sapiens neuronal and epithelial
           glutamate transporter protein.
          Length = 524

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = -2

Query: 250 GLKMLLEYFVHGIIEYDLGSILLVFRTPXXXXXXXXXXXXXXXLEVK----FLDRRKTNI 83
           GL++++ YF   +I   LG +L+V   P                EV      LD  +   
Sbjct: 91  GLRVVVYYFCTTLIAVILGIVLVVSIKPGVTQKVGEIARTGSTPEVSTVDAMLDLIRNMF 150

Query: 82  SESICQRCFHQSRTK 38
            E++ Q CF Q +TK
Sbjct: 151 PENLVQACFQQYKTK 165


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,998,197
Number of Sequences: 237096
Number of extensions: 1442017
Number of successful extensions: 2482
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2475
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)