Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0721.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3) iden...    30   0.89 
At3g49060.1 68416.m05360 protein kinase family protein / U-box d...    27   6.2  
At1g52620.1 68414.m05941 pentatricopeptide (PPR) repeat-containi...    27   6.2  
At5g38320.1 68418.m04625 expressed protein  ; expression support...    27   8.3  
At4g23370.1 68417.m03370 hypothetical protein predicted proteins...    27   8.3  

>At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3)
           identical to FUSCA3 GB:AAC35247 [Arabidopsis thaliana]
           (Plant J. 6, 379-387 (1994))
          Length = 313

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 22/67 (32%), Positives = 31/67 (46%)
 Frame = +3

Query: 96  RRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSPLEHSNLFK 275
           RRS + + N+    PP+ PI+H    L   KI+PR    +   +  +S  S L    L K
Sbjct: 53  RRSSS-SFNLLSFPPPMPPISHVPTPLPARKIDPRKLRFLFQKELKNSDVSSLRRMILPK 111

Query: 276 VKLSAHL 296
               AHL
Sbjct: 112 KAAEAHL 118


>At3g49060.1 68416.m05360 protein kinase family protein / U-box
           domain-containing protein contains Pfam profile: PF00069
           Eukaryotic protein kinase domain
          Length = 805

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 60  HLWQMLSLMFVLRRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIE 194
           H+W +     +  R+ N  SN    MPP++ ++      K+ K+E
Sbjct: 162 HIWFLCKGYLIFTRASNDDSNNRQTMPPLVQLDSDNETRKSEKLE 206


>At1g52620.1 68414.m05941 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 819

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 286 DNFTLNKLECSSGLKMLLEYFVHGIIEYDLGSI 188
           D F  N   CSS LK+L  Y +   IE  LG++
Sbjct: 93  DEFFSNGFACSSFLKLLARYRIFNEIEDVLGNL 125


>At5g38320.1 68418.m04625 expressed protein  ; expression supported
           by MPSS
          Length = 212

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 99  RSKNFTSNVAIRMPPVIPINHYLGVLKTNKIEPRSYSI-IPCTKYSSS 239
           RSK       +  P +IPI  +  VL+  +I  + Y + +P   Y+S+
Sbjct: 85  RSKTDKYKTGLPRPEIIPIEDFEPVLEIEEIGDQEYEVKLPLLPYNST 132


>At4g23370.1 68417.m03370 hypothetical protein predicted proteins,
           Arabidopsis thaliana contains Pfam profile PF03080:
           Arabidopsis proteins of unknown function
          Length = 1021

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = +3

Query: 441 YELFNRNQFLVYRYWSXE--LPXACWXQTCPXIV 536
           Y+  NRN   +Y YW+ +      C+   CP  V
Sbjct: 189 YQWLNRNHTRLYTYWTTDGFKKTGCYNTLCPGFV 222


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,765,351
Number of Sequences: 28952
Number of extensions: 211366
Number of successful extensions: 487
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)