Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0720.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.6  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   2.6  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   6.0  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   6.0  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   6.0  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 574 KRGXXCKAIXLGTPGFSQSSTLKTT 500
           K+G     I LG P F +S TL+ T
Sbjct: 405 KKGFPKSKIVLGVPFFGRSFTLQFT 429


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 456 VPNSPYSESYYNLLAVVFNVDD 521
           V N PYS   YNL  +   ++D
Sbjct: 417 VNNQPYSRDSYNLAGMGETIED 438



 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/40 (22%), Positives = 22/40 (55%)
 Frame = -1

Query: 175 SIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKML 56
           ++K +E++ ++  +     +    D+I+V+P+  D  K L
Sbjct: 265 AVKRKEKKAQKEKDKPNSTTNGSPDVIKVEPELSDSEKTL 304


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = -1

Query: 577 AKRGXXCKAIXLGTPGFSQSSTL 509
           A+RG    ++ LG+PG + ++++
Sbjct: 138 ARRGVLYSSVFLGSPGDASNASI 160


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = -1

Query: 577 AKRGXXCKAIXLGTPGFSQSSTL 509
           A+RG    ++ LG+PG + ++++
Sbjct: 294 ARRGVLYSSVFLGSPGDASNASI 316


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 468 ANWVPGPPSRSTVSISLISNSRPLVQLQ 385
           ++W   PP R+ V +SL ++     QL+
Sbjct: 35  SSWPGRPPKRAPVGLSLAASHLQQQQLK 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,540
Number of Sequences: 336
Number of extensions: 2327
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)