Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0720.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...   103   2e-23
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...   103   3e-23
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    28   1.2  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   2.7  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   2.7  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    26   3.6  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    26   3.6  

>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score =  103 bits (247), Expect = 2e-23
 Identities = 49/71 (69%), Positives = 57/71 (80%)
 Frame = -1

Query: 253 KPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTK 74
           K LRNKIAG+ THLM+R++   VRGIS KLQEEERER+D YVPEVS LE D I VD DTK
Sbjct: 44  KRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTK 103

Query: 73  DMLKMLDFNNI 41
           DMLK L +++I
Sbjct: 104 DMLKALGYDSI 114



 Score = 37.5 bits (83), Expect = 0.001
 Identities = 21/50 (42%), Positives = 25/50 (50%)
 Frame = -2

Query: 381 MGRXRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTSLLGIKL 232
           MGR R                 RLTLDF TNKRI +E+AII +  L  K+
Sbjct: 1   MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKI 50


>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score =  103 bits (246), Expect = 3e-23
 Identities = 51/82 (62%), Positives = 62/82 (75%)
 Frame = -1

Query: 253 KPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTK 74
           K LRNKIAG+ THLM+R++   VRGIS KLQEEERER+D YVPEVS LE D + VD DTK
Sbjct: 44  KRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTK 103

Query: 73  DMLKMLDFNNINGLQLTQPATQ 8
           DMLK L ++ I  +++  PA Q
Sbjct: 104 DMLKSLGYDQI-PVRVLAPAPQ 124



 Score = 37.5 bits (83), Expect = 0.001
 Identities = 21/50 (42%), Positives = 25/50 (50%)
 Frame = -2

Query: 381 MGRXRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTSLLGIKL 232
           MGR R                 RLTLDF TNKRI +E+AII +  L  K+
Sbjct: 1   MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKI 50


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +2

Query: 29  LQAINIVEVQHLQHILGVGVYFDDVMFESRHFWDIVVTPLTLLFL-KFDR-DSSHL 190
           L+  NI+E +++  +    +YF+  M  + +FW I   P  +L   KF + ++SHL
Sbjct: 368 LEVKNIIEQRNVTTMENCNLYFNPEMPTTIYFWKIYSAPTWMLARPKFSQINTSHL 423


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 193 SQVRGISIKLQEEERERRDNYVPEV 119
           S V  ISIK QEEER+R+     E+
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEI 375


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 208 RRLRHSQVRGISIKLQEEERERRDNYVPEVS 116
           R+   S+ R  S KL EEER+RR  +V +++
Sbjct: 218 RKRSRSRPRERSSKLSEEERDRRTVFVSQLA 248


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
 Frame = -1

Query: 271 NRYHSYKPLRNKIAGF----ATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEH 104
           +++HS + +R +IA F    A H ++R   S+    ++ + E   +R   Y+P +S    
Sbjct: 365 HQWHSLR-IREQIASFMLDIADHNVKRYGKSEESSSTMNVGEGLLKRTKKYIPILSRQRQ 423

Query: 103 DIIEV 89
           + +EV
Sbjct: 424 ESVEV 428


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 65  QHILGVGVYFDDVMFESRHFWDIVVTPLTLLFLKFDRD 178
           Q  L VG+  DD+   +R+   ++ TP++ L    DRD
Sbjct: 172 QTALNVGIQLDDMGVFARNHVKVLGTPISTLKTSEDRD 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,165,055
Number of Sequences: 5004
Number of extensions: 38810
Number of successful extensions: 110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)