Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0720.Seq
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0066 - 537729-538163 93 2e-19
10_07_0174 + 13815478-13815903 92 3e-19
03_02_0943 + 12598616-12598789,12599790-12601250 31 0.53
07_01_0358 - 2631214-2632992 31 0.92
06_01_0889 - 6807449-6809257 30 1.6
05_01_0006 - 44159-44206,44805-44850,45730-45818,46377-46394,464... 28 6.5
04_04_0339 - 24513699-24516827 27 8.6
03_02_0324 - 7463482-7463601,7463660-7463736,7463827-7463883,746... 27 8.6
>03_01_0066 - 537729-538163
Length = 144
Score = 92.7 bits (220), Expect = 2e-19
Identities = 47/79 (59%), Positives = 60/79 (75%)
Frame = -1
Query: 253 KPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTK 74
K LRNK+AGF+THLMRR++ VRGIS+KLQEEERERR ++VP+ SALE D I VD +T
Sbjct: 44 KRLRNKVAGFSTHLMRRIQRGPVRGISLKLQEEERERRMDFVPDRSALEVDDIRVDKETL 103
Query: 73 DMLKMLDFNNINGLQLTQP 17
DML L ++ G+ + QP
Sbjct: 104 DMLTSLGMADLPGV-VRQP 121
Score = 36.7 bits (81), Expect = 0.014
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -2
Query: 381 MGRXRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTSLLGIKL 232
MGR R +R+TLDF TNK++ EE++I+P+ L K+
Sbjct: 1 MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKV 50
>10_07_0174 + 13815478-13815903
Length = 141
Score = 92.3 bits (219), Expect = 3e-19
Identities = 45/78 (57%), Positives = 58/78 (74%)
Frame = -1
Query: 253 KPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTK 74
K LRNK+AGF THLMRR++ VRGIS+KLQEEERERR ++VPE SALE + I VD +T
Sbjct: 44 KRLRNKVAGFTTHLMRRIQRGPVRGISLKLQEEERERRMDFVPEKSALEVEEIRVDKETM 103
Query: 73 DMLKMLDFNNINGLQLTQ 20
+ML L ++ G++ Q
Sbjct: 104 EMLAALGMADLPGVERQQ 121
Score = 36.7 bits (81), Expect = 0.014
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -2
Query: 381 MGRXRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTSLLGIKL 232
MGR R +R+TLDF TNK++ EE++I+P+ L K+
Sbjct: 1 MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKV 50
>03_02_0943 + 12598616-12598789,12599790-12601250
Length = 544
Score = 31.5 bits (68), Expect = 0.53
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = -1
Query: 232 AGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLD 53
A +++HL+RR+ + K Q EE ++ + + + LEHD+I + +T D+LK L+
Sbjct: 41 AAWSSHLIRRMFAPP----NPKEQSEESKQPVDIKEQAAQLEHDLIIKEKETLDVLKELE 96
>07_01_0358 - 2631214-2632992
Length = 592
Score = 30.7 bits (66), Expect = 0.92
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -1
Query: 274 RNRYHSYKPLRNKIAGFATHLMRRLRHSQVRGISIKLQE-EERERRDNYVPEVSALEHDI 98
+N HS LRN + F +M H + I L E ER RR+ Y+P S + DI
Sbjct: 456 KNPGHSLVELRNSVYEF---VMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADI 512
Query: 97 IEVDPDT 77
E + +T
Sbjct: 513 EEEEKET 519
>06_01_0889 - 6807449-6809257
Length = 602
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -1
Query: 202 LRHSQVRGI-SIKLQEEERERRDNYVPEVSALEHDIIEVDPD 80
LRH Q R I ++ + R R + YVP+ HD+ E D +
Sbjct: 487 LRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDVAEEDKE 528
>05_01_0006 -
44159-44206,44805-44850,45730-45818,46377-46394,
46490-46609,46702-46772,47038-47086,47567-47658,
47769-47811,47928-48049,48143-48426,48961-49148,
49220-49336,49516-49557,49991-50101,50530-50688,
50710-50769,50850-50927,51010-51103,51182-51483,
51659-51721,51808-51936
Length = 774
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = -1
Query: 178 ISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKML 56
++I++Q + +R + +V A E I DP+TK+++K +
Sbjct: 615 LAIEVQPLDDRKRKGEIVKVYANEQKKITCDPETKELIKKI 655
>04_04_0339 - 24513699-24516827
Length = 1042
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 233 NFIPKRLVGMIAISSHILLFVSKSSVNLV*YFSIIIFXAFLTVLVRXRPMA 385
+F P++L GM I L SKS +++ YFS I+ + V+ + R A
Sbjct: 416 SFTPEQLTGMFVADDLIKLSSSKSDMHM--YFSKIMTEHYYDVMQKPRHKA 464
>03_02_0324 -
7463482-7463601,7463660-7463736,7463827-7463883,
7464154-7464246,7464528-7464654,7464836-7466794
Length = 810
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 196 HSQVRGISIKLQEEERERRD-NYVPEVSALEHDIIEVDPD 80
H Q + I KL E R R+ Y PEV A HD+ E D +
Sbjct: 551 HPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDKE 590
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,199,805
Number of Sequences: 37544
Number of extensions: 258834
Number of successful extensions: 641
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -