Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0720.Seq
(598 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M18000-1|AAA60285.1| 135|Homo sapiens RPS17 protein. 130 4e-30
M13932-1|AAA60284.1| 135|Homo sapiens RPS17 protein. 130 4e-30
BC071928-1|AAH71928.1| 135|Homo sapiens ribosomal protein S17 p... 130 4e-30
BC070222-1|AAH70222.1| 135|Homo sapiens ribosomal protein S17 p... 130 4e-30
BC062715-1|AAH62715.1| 135|Homo sapiens ribosomal protein S17 p... 130 4e-30
BC049824-1|AAH49824.1| 135|Homo sapiens ribosomal protein S17 p... 130 4e-30
BC022370-1|AAH22370.1| 135|Homo sapiens ribosomal protein S17 p... 130 4e-30
BC019899-1|AAH19899.1| 135|Homo sapiens ribosomal protein S17 p... 130 4e-30
BC009407-1|AAH09407.1| 135|Homo sapiens ribosomal protein S17 p... 130 4e-30
AK026570-1|BAB15501.1| 135|Homo sapiens atory regulatory compon... 130 4e-30
AL049693-2|CAB89564.1| 135|Homo sapiens protein ( Human DNA seq... 121 2e-27
BC128593-1|AAI28594.1| 405|Homo sapiens CCDC4 protein protein. 29 9.5
BC128592-1|AAI28593.1| 312|Homo sapiens CCDC4 protein protein. 29 9.5
AK125953-1|BAC86359.1| 416|Homo sapiens protein ( Homo sapiens ... 29 9.5
AB126829-1|BAD93192.1| 437|Homo sapiens hypothetical protein pr... 29 9.5
AB126828-1|BAD93191.1| 530|Homo sapiens hypothetical protein pr... 29 9.5
>M18000-1|AAA60285.1| 135|Homo sapiens RPS17 protein.
Length = 135
Score = 130 bits (314), Expect = 4e-30
Identities = 59/79 (74%), Positives = 71/79 (89%)
Frame = -1
Query: 253 KPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTK 74
K LRNKIAG+ THLM+R++ VRGISIKLQEEERERRDNYVPEVSAL+ +IIEVDPDTK
Sbjct: 44 KKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTK 103
Query: 73 DMLKMLDFNNINGLQLTQP 17
+MLK+LDF +++ LQ+TQP
Sbjct: 104 EMLKLLDFGSLSNLQVTQP 122
Score = 39.9 bits (89), Expect = 0.007
Identities = 23/50 (46%), Positives = 26/50 (52%)
Frame = -2
Query: 381 MGRXRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTSLLGIKL 232
MGR R TRL DF TNKR+CEEIAIIP+ L K+
Sbjct: 1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKI 50
>M13932-1|AAA60284.1| 135|Homo sapiens RPS17 protein.
Length = 135
Score = 130 bits (314), Expect = 4e-30
Identities = 59/79 (74%), Positives = 71/79 (89%)
Frame = -1
Query: 253 KPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTK 74
K LRNKIAG+ THLM+R++ VRGISIKLQEEERERRDNYVPEVSAL+ +IIEVDPDTK
Sbjct: 44 KKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTK 103
Query: 73 DMLKMLDFNNINGLQLTQP 17
+MLK+LDF +++ LQ+TQP
Sbjct: 104 EMLKLLDFGSLSNLQVTQP 122
Score = 39.9 bits (89), Expect = 0.007
Identities = 23/50 (46%), Positives = 26/50 (52%)
Frame = -2
Query: 381 MGRXRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTSLLGIKL 232
MGR R TRL DF TNKR+CEEIAIIP+ L K+
Sbjct: 1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKI 50
>BC071928-1|AAH71928.1| 135|Homo sapiens ribosomal protein S17
protein.
Length = 135
Score = 130 bits (314), Expect = 4e-30
Identities = 59/79 (74%), Positives = 71/79 (89%)
Frame = -1
Query: 253 KPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTK 74
K LRNKIAG+ THLM+R++ VRGISIKLQEEERERRDNYVPEVSAL+ +IIEVDPDTK
Sbjct: 44 KKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTK 103
Query: 73 DMLKMLDFNNINGLQLTQP 17
+MLK+LDF +++ LQ+TQP
Sbjct: 104 EMLKLLDFGSLSNLQVTQP 122
Score = 39.9 bits (89), Expect = 0.007
Identities = 23/50 (46%), Positives = 26/50 (52%)
Frame = -2
Query: 381 MGRXRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTSLLGIKL 232
MGR R TRL DF TNKR+CEEIAIIP+ L K+
Sbjct: 1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKI 50
>BC070222-1|AAH70222.1| 135|Homo sapiens ribosomal protein S17
protein.
Length = 135
Score = 130 bits (314), Expect = 4e-30
Identities = 59/79 (74%), Positives = 71/79 (89%)
Frame = -1
Query: 253 KPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTK 74
K LRNKIAG+ THLM+R++ VRGISIKLQEEERERRDNYVPEVSAL+ +IIEVDPDTK
Sbjct: 44 KKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTK 103
Query: 73 DMLKMLDFNNINGLQLTQP 17
+MLK+LDF +++ LQ+TQP
Sbjct: 104 EMLKLLDFGSLSNLQVTQP 122
Score = 39.9 bits (89), Expect = 0.007
Identities = 23/50 (46%), Positives = 26/50 (52%)
Frame = -2
Query: 381 MGRXRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTSLLGIKL 232
MGR R TRL DF TNKR+CEEIAIIP+ L K+
Sbjct: 1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKI 50
>BC062715-1|AAH62715.1| 135|Homo sapiens ribosomal protein S17
protein.
Length = 135
Score = 130 bits (314), Expect = 4e-30
Identities = 59/79 (74%), Positives = 71/79 (89%)
Frame = -1
Query: 253 KPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTK 74
K LRNKIAG+ THLM+R++ VRGISIKLQEEERERRDNYVPEVSAL+ +IIEVDPDTK
Sbjct: 44 KKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTK 103
Query: 73 DMLKMLDFNNINGLQLTQP 17
+MLK+LDF +++ LQ+TQP
Sbjct: 104 EMLKLLDFGSLSNLQVTQP 122
Score = 39.9 bits (89), Expect = 0.007
Identities = 23/50 (46%), Positives = 26/50 (52%)
Frame = -2
Query: 381 MGRXRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTSLLGIKL 232
MGR R TRL DF TNKR+CEEIAIIP+ L K+
Sbjct: 1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKI 50
>BC049824-1|AAH49824.1| 135|Homo sapiens ribosomal protein S17
protein.
Length = 135
Score = 130 bits (314), Expect = 4e-30
Identities = 59/79 (74%), Positives = 71/79 (89%)
Frame = -1
Query: 253 KPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTK 74
K LRNKIAG+ THLM+R++ VRGISIKLQEEERERRDNYVPEVSAL+ +IIEVDPDTK
Sbjct: 44 KKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTK 103
Query: 73 DMLKMLDFNNINGLQLTQP 17
+MLK+LDF +++ LQ+TQP
Sbjct: 104 EMLKLLDFGSLSNLQVTQP 122
Score = 39.9 bits (89), Expect = 0.007
Identities = 23/50 (46%), Positives = 26/50 (52%)
Frame = -2
Query: 381 MGRXRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTSLLGIKL 232
MGR R TRL DF TNKR+CEEIAIIP+ L K+
Sbjct: 1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKI 50
>BC022370-1|AAH22370.1| 135|Homo sapiens ribosomal protein S17
protein.
Length = 135
Score = 130 bits (314), Expect = 4e-30
Identities = 59/79 (74%), Positives = 71/79 (89%)
Frame = -1
Query: 253 KPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTK 74
K LRNKIAG+ THLM+R++ VRGISIKLQEEERERRDNYVPEVSAL+ +IIEVDPDTK
Sbjct: 44 KKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTK 103
Query: 73 DMLKMLDFNNINGLQLTQP 17
+MLK+LDF +++ LQ+TQP
Sbjct: 104 EMLKLLDFGSLSNLQVTQP 122
Score = 39.9 bits (89), Expect = 0.007
Identities = 23/50 (46%), Positives = 26/50 (52%)
Frame = -2
Query: 381 MGRXRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTSLLGIKL 232
MGR R TRL DF TNKR+CEEIAIIP+ L K+
Sbjct: 1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKI 50
>BC019899-1|AAH19899.1| 135|Homo sapiens ribosomal protein S17
protein.
Length = 135
Score = 130 bits (314), Expect = 4e-30
Identities = 59/79 (74%), Positives = 71/79 (89%)
Frame = -1
Query: 253 KPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTK 74
K LRNKIAG+ THLM+R++ VRGISIKLQEEERERRDNYVPEVSAL+ +IIEVDPDTK
Sbjct: 44 KKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTK 103
Query: 73 DMLKMLDFNNINGLQLTQP 17
+MLK+LDF +++ LQ+TQP
Sbjct: 104 EMLKLLDFGSLSNLQVTQP 122
Score = 39.9 bits (89), Expect = 0.007
Identities = 23/50 (46%), Positives = 26/50 (52%)
Frame = -2
Query: 381 MGRXRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTSLLGIKL 232
MGR R TRL DF TNKR+CEEIAIIP+ L K+
Sbjct: 1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKI 50
>BC009407-1|AAH09407.1| 135|Homo sapiens ribosomal protein S17
protein.
Length = 135
Score = 130 bits (314), Expect = 4e-30
Identities = 59/79 (74%), Positives = 71/79 (89%)
Frame = -1
Query: 253 KPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTK 74
K LRNKIAG+ THLM+R++ VRGISIKLQEEERERRDNYVPEVSAL+ +IIEVDPDTK
Sbjct: 44 KKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTK 103
Query: 73 DMLKMLDFNNINGLQLTQP 17
+MLK+LDF +++ LQ+TQP
Sbjct: 104 EMLKLLDFGSLSNLQVTQP 122
Score = 39.9 bits (89), Expect = 0.007
Identities = 23/50 (46%), Positives = 26/50 (52%)
Frame = -2
Query: 381 MGRXRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTSLLGIKL 232
MGR R TRL DF TNKR+CEEIAIIP+ L K+
Sbjct: 1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKI 50
>AK026570-1|BAB15501.1| 135|Homo sapiens atory regulatory component
Gs of adenylyl protein.
Length = 135
Score = 130 bits (314), Expect = 4e-30
Identities = 59/79 (74%), Positives = 71/79 (89%)
Frame = -1
Query: 253 KPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTK 74
K LRNKIAG+ THLM+R++ VRGISIKLQEEERERRDNYVPEVSAL+ +IIEVDPDTK
Sbjct: 44 KKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTK 103
Query: 73 DMLKMLDFNNINGLQLTQP 17
+MLK+LDF +++ LQ+TQP
Sbjct: 104 EMLKLLDFGSLSNLQVTQP 122
Score = 39.9 bits (89), Expect = 0.007
Identities = 23/50 (46%), Positives = 26/50 (52%)
Frame = -2
Query: 381 MGRXRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTSLLGIKL 232
MGR R TRL DF TNKR+CEEIAIIP+ L K+
Sbjct: 1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKI 50
>AL049693-2|CAB89564.1| 135|Homo sapiens protein ( Human DNA
sequence from clone RP4-753D5 on chromosome 6p12.1-12.3
Contains the 3' end of the TFAP2B gene for transcription
factor AP-2 sium/caltranscription factor AP-2 beta
(activating enhancer binding protein 2 beta)).
Length = 135
Score = 121 bits (291), Expect = 2e-27
Identities = 54/79 (68%), Positives = 67/79 (84%)
Frame = -1
Query: 253 KPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTK 74
K L NK AG+ THLM++++ VRGISIKLQEE RERRDNYVPE+SAL+ +IIEVDPDTK
Sbjct: 44 KKLHNKTAGYVTHLMKQIQRGPVRGISIKLQEEVRERRDNYVPEISALDQEIIEVDPDTK 103
Query: 73 DMLKMLDFNNINGLQLTQP 17
+MLK+LDF ++ LQ+TQP
Sbjct: 104 EMLKLLDFGGLSNLQVTQP 122
Score = 31.9 bits (69), Expect = 1.8
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = -2
Query: 303 DFDTNKRICEEIAIIPTSLL 244
DF TNK +C+EIAIIP+ L
Sbjct: 27 DFHTNKHMCKEIAIIPSKKL 46
>BC128593-1|AAI28594.1| 405|Homo sapiens CCDC4 protein protein.
Length = 405
Score = 29.5 bits (63), Expect = 9.5
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = -1
Query: 163 QEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLD 53
+EEE E + Y P LE ++I + + +++ + L+
Sbjct: 183 EEEEEEDEEGYCPRCQELEQEVISLQQENEELRRKLE 219
>BC128592-1|AAI28593.1| 312|Homo sapiens CCDC4 protein protein.
Length = 312
Score = 29.5 bits (63), Expect = 9.5
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = -1
Query: 163 QEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLD 53
+EEE E + Y P LE ++I + + +++ + L+
Sbjct: 183 EEEEEEDEEGYCPRCQELEQEVISLQQENEELRRKLE 219
>AK125953-1|BAC86359.1| 416|Homo sapiens protein ( Homo sapiens
cDNA FLJ43965 fis, clone TESTI4017001. ).
Length = 416
Score = 29.5 bits (63), Expect = 9.5
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = -1
Query: 163 QEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLD 53
+EEE E + Y P LE ++I + + +++ + L+
Sbjct: 234 EEEEEEDEEGYCPRCQELEQEVISLQQENEELRRKLE 270
>AB126829-1|BAD93192.1| 437|Homo sapiens hypothetical protein
protein.
Length = 437
Score = 29.5 bits (63), Expect = 9.5
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = -1
Query: 163 QEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLD 53
+EEE E + Y P LE ++I + + +++ + L+
Sbjct: 308 EEEEEEDEEGYCPRCQELEQEVISLQQENEELRRKLE 344
>AB126828-1|BAD93191.1| 530|Homo sapiens hypothetical protein
protein.
Length = 530
Score = 29.5 bits (63), Expect = 9.5
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = -1
Query: 163 QEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLD 53
+EEE E + Y P LE ++I + + +++ + L+
Sbjct: 308 EEEEEEDEEGYCPRCQELEQEVISLQQENEELRRKLE 344
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,022,010
Number of Sequences: 237096
Number of extensions: 1430290
Number of successful extensions: 4105
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4105
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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