Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0720.Seq
         (598 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M22142-1|AAA28869.1|  131|Drosophila melanogaster protein ( D.me...   146   2e-35
BT001651-1|AAN71406.1|  131|Drosophila melanogaster RE44119p pro...   146   2e-35
AJ271817-3|CAB72251.1|  131|Drosophila melanogaster ribosomal pr...   146   2e-35
AE014296-1654|AAF50272.1|  131|Drosophila melanogaster CG3922-PB...   146   2e-35

>M22142-1|AAA28869.1|  131|Drosophila melanogaster protein (
           D.melanogaster ribosomalprotein S17 gene, complete cds.
           ).
          Length = 131

 Score =  146 bits (354), Expect = 2e-35
 Identities = 70/81 (86%), Positives = 74/81 (91%)
 Frame = -1

Query: 253 KPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTK 74
           KPLRNKIAG+ THLM RLRHSQVRGISIKLQEEERERRDNYVP VSALE DIIEVD DTK
Sbjct: 44  KPLRNKIAGYVTHLMGRLRHSQVRGISIKLQEEERERRDNYVPAVSALEQDIIEVDADTK 103

Query: 73  DMLKMLDFNNINGLQLTQPAT 11
           +MLK+LDF+NI GLQLTQP T
Sbjct: 104 EMLKLLDFHNIRGLQLTQPNT 124



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 26/50 (52%), Positives = 28/50 (56%)
 Frame = -2

Query: 381 MGRXRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTSLLGIKL 232
           MGR R                TRLTLDF TNKRICEE+AIIPT  L  K+
Sbjct: 1   MGRVRTKTVKKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKI 50


>BT001651-1|AAN71406.1|  131|Drosophila melanogaster RE44119p
           protein.
          Length = 131

 Score =  146 bits (354), Expect = 2e-35
 Identities = 70/81 (86%), Positives = 74/81 (91%)
 Frame = -1

Query: 253 KPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTK 74
           KPLRNKIAG+ THLM RLRHSQVRGISIKLQEEERERRDNYVP VSALE DIIEVD DTK
Sbjct: 44  KPLRNKIAGYVTHLMGRLRHSQVRGISIKLQEEERERRDNYVPAVSALEQDIIEVDADTK 103

Query: 73  DMLKMLDFNNINGLQLTQPAT 11
           +MLK+LDF+NI GLQLTQP T
Sbjct: 104 EMLKLLDFHNIRGLQLTQPNT 124



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 26/50 (52%), Positives = 28/50 (56%)
 Frame = -2

Query: 381 MGRXRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTSLLGIKL 232
           MGR R                TRLTLDF TNKRICEE+AIIPT  L  K+
Sbjct: 1   MGRVRTKTVKKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKI 50


>AJ271817-3|CAB72251.1|  131|Drosophila melanogaster ribosomal
           protein S17 protein.
          Length = 131

 Score =  146 bits (354), Expect = 2e-35
 Identities = 70/81 (86%), Positives = 74/81 (91%)
 Frame = -1

Query: 253 KPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTK 74
           KPLRNKIAG+ THLM RLRHSQVRGISIKLQEEERERRDNYVP VSALE DIIEVD DTK
Sbjct: 44  KPLRNKIAGYVTHLMGRLRHSQVRGISIKLQEEERERRDNYVPAVSALEQDIIEVDADTK 103

Query: 73  DMLKMLDFNNINGLQLTQPAT 11
           +MLK+LDF+NI GLQLTQP T
Sbjct: 104 EMLKLLDFHNIRGLQLTQPNT 124



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 26/50 (52%), Positives = 28/50 (56%)
 Frame = -2

Query: 381 MGRXRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTSLLGIKL 232
           MGR R                TRLTLDF TNKRICEE+AIIPT  L  K+
Sbjct: 1   MGRVRTKTVKKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKI 50


>AE014296-1654|AAF50272.1|  131|Drosophila melanogaster CG3922-PB
           protein.
          Length = 131

 Score =  146 bits (354), Expect = 2e-35
 Identities = 70/81 (86%), Positives = 74/81 (91%)
 Frame = -1

Query: 253 KPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTK 74
           KPLRNKIAG+ THLM RLRHSQVRGISIKLQEEERERRDNYVP VSALE DIIEVD DTK
Sbjct: 44  KPLRNKIAGYVTHLMGRLRHSQVRGISIKLQEEERERRDNYVPAVSALEQDIIEVDADTK 103

Query: 73  DMLKMLDFNNINGLQLTQPAT 11
           +MLK+LDF+NI GLQLTQP T
Sbjct: 104 EMLKLLDFHNIRGLQLTQPNT 124



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 26/50 (52%), Positives = 28/50 (56%)
 Frame = -2

Query: 381 MGRXRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTSLLGIKL 232
           MGR R                TRLTLDF TNKRICEE+AIIPT  L  K+
Sbjct: 1   MGRVRTKTVKKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKI 50


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,451,722
Number of Sequences: 53049
Number of extensions: 430466
Number of successful extensions: 1062
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2420893683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)