Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0720.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...    98   4e-21
AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protei...    32   0.36 
AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math ...    29   3.3  
AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical...    28   4.4  
U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/reti...    28   5.8  
AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory car...    28   5.8  
AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synapt...    28   5.8  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score = 98.3 bits (234), Expect = 4e-21
 Identities = 48/72 (66%), Positives = 55/72 (76%), Gaps = 3/72 (4%)
 Frame = -1

Query: 253 KPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHD---IIEVDP 83
           KPLRNKIAG+ THLMRR+    VRGISIKLQEEERERRDNY+PE+S ++      I+VD 
Sbjct: 44  KPLRNKIAGYITHLMRRIERGPVRGISIKLQEEERERRDNYMPEISTVDPSQLTSIKVDT 103

Query: 82  DTKDMLKMLDFN 47
           DT DMLK   FN
Sbjct: 104 DTSDMLKAAGFN 115



 Score = 33.1 bits (72), Expect = 0.15
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -2

Query: 315 RLTLDFDTNKRICEEIAIIPTSLLGIKL 232
           R+T DF  NKR+C+E+AII +  L  K+
Sbjct: 23  RMTNDFHNNKRVCDEVAIIGSKPLRNKI 50


>AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protein 4
           protein.
          Length = 741

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = -2

Query: 267 AIIPTSLLGIKLLDLPHI**GVSDT--RKCEESLSNFRKRSVRGVTTMSQKCL 115
           A + +SL GI++  L     G S+T  RKCEE L +F    V+G+T  ++ C+
Sbjct: 636 AKLESSLTGIEVAVLQ----GTSETIRRKCEEILKHFDATVVKGITPSTKLCI 684


>AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math
           domain containingprotein 3 protein.
          Length = 306

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -2

Query: 234 LLDLPHI**GVSDTRKCEESLSNFRKRSVRGVTTMSQKCLLSNMTSS 94
           +L L H+      TRKCEE L +F ++ ++    +++K  L N+  S
Sbjct: 222 ILHLAHMYDMPFPTRKCEEFLIDFSEKPIKEKLKVAKKYQLENLKKS 268


>AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical
           protein F46F5.11 protein.
          Length = 796

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
 Frame = -1

Query: 184 RGISIKLQEEERERRDN----YVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQL 26
           RG  ++  E+ + R D+    Y  + +A++  ++  DPD   + ++L  ++ NGL L
Sbjct: 187 RGFPLEHIEKHKNRNDSQVLCYEMKRAAVQQGLVHHDPDVDAIYRLLHADSKNGLNL 243


>U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/retinol
           binding proteinprotein 8 protein.
          Length = 232

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 230 WICHTFNEASQTLASARNLYQTSGRGA 150
           W CH FN A   ++ A+ L Q     A
Sbjct: 150 WACHIFNNAKSAVSGAKALLQDDSEAA 176


>AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory
           carrier membrane protein protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 265 YHSYKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 140
           + S   L NK AG    L R+ +  + R   ++++EEE +RR
Sbjct: 54  HQSTGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


>AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synaptic
           vesicle protein)homolog protein 1 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 265 YHSYKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 140
           + S   L NK AG    L R+ +  + R   ++++EEE +RR
Sbjct: 54  HQSTGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,914,576
Number of Sequences: 27780
Number of extensions: 219166
Number of successful extensions: 684
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)